PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526698.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

GRF

Protein Properties

Length: 508aa MW: 54672.8 Da PI: 8.3882

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526698.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	77.3	1.5e-24	207	251	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr++++++k+CErH++rgr+rsrk++e+ XP_010526698.1 207 DPEPGRCRRTDGKKWRCSRDAVPDQKYCERHINRGRHRSRKPVES 251 79****************************************985 PP
2	QLQ	47.3	6.2e-17	141	177	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT +Q+++L++Q+l+yKy+ an vPp Ll+ ++k XP_010526698.1 141 GPFTLMQWAELEQQALIYKYITANIHVPPSLLLSLKK 177 59******************************99875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00951	1.0E-8	141	177	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51666	19.771	142	177	IPR014978	Glutamine-Leucine-Glutamine, QLQ
Pfam	PF08880	3.3E-11	142	174	IPR014978	Glutamine-Leucine-Glutamine, QLQ
PROSITE profile	PS51667	26.207	207	251	IPR014977	WRC domain
Pfam	PF08879	3.2E-21	208	250	IPR014977	WRC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0005524	Molecular Function	ATP binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MDLGVRGQGF VSGHEDGAPT HSELGSGFAR QDGSGFGGED YWRSSKLART EDLSGCKTLS 60 FHQGIPLLRS TSLISSDPSR QESMLSFSSD KSEALDFSKD GGLVNKSHLS PYLQQLPSSY 120 SRNAGGMMNT AMHGNFTGVG GPFTLMQWAE LEQQALIYKY ITANIHVPPS LLLSLKKSFY 180 PYAPGSLPPN SFGWGSFHLG FSGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR 240 GRHRSRKPVE SHSGHTAAGS TTSKAVTPSS VAVDRGRGQA NPSTDPLANR VQNSRGASIF 300 PPTISLQPKE SPAAPQKQEN PFEFGFISSD SWPNPSQKPP SMDSAKGFGS YLDFTSQEKQ 360 NSSNQNIVSW PEELKPDWTQ LSMSIPMASA SSSPSLSPLR LSREFDPAIQ MGLGVNCEVT 420 EPVKKVSNWI PISWGNSLGG PLGEMLNSTS NSPKLGSSPT GVLQKSSFCS LSNSSSGSSP 480 VPVGGQNKKG GDRDGLCEDL LLNCENNK

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MDLGVRGQGF VSGHEDGAPT HSELGSGFAR QDGSGFGGED YWRSSKLART EDLSGCKTLS  60
FHQGIPLLRS TSLISSDPSR QESMLSFSSD KSEALDFSKD GGLVNKSHLS PYLQQLPSSY  120
SRNAGGMMNT AMHGNFTGVG GPFTLMQWAE LEQQALIYKY ITANIHVPPS LLLSLKKSFY  180
PYAPGSLPPN SFGWGSFHLG FSGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR  240
GRHRSRKPVE SHSGHTAAGS TTSKAVTPSS VAVDRGRGQA NPSTDPLANR VQNSRGASIF  300
PPTISLQPKE SPAAPQKQEN PFEFGFISSD SWPNPSQKPP SMDSAKGFGS YLDFTSQEKQ  360
NSSNQNIVSW PEELKPDWTQ LSMSIPMASA SSSPSLSPLR LSREFDPAIQ MGLGVNCEVT  420
EPVKKVSNWI PISWGNSLGG PLGEMLNSTS NSPKLGSSPT GVLQKSSFCS LSNSSSGSSP  480
VPVGGQNKKG GDRDGLCEDL LLNCENNK

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that plays a role in the regulation of cell expansion in leaf and cotyledons tissues. Component of a network formed by miR396, the GRFs and their interacting factors (GIFs) acting in the regulation of meristem function, at least partially through the control of cell proliferation. microRNA396-GRF1/GRF3 regulatory module acts as a developmental regulator in the reprogramming of root cells during cyst nematode infection, leading to the formation of the syncytium. {ECO:0000269\|PubMed:12974814, ECO:0000269\|PubMed:15326298, ECO:0000269\|PubMed:22419826, ECO:0000269\|PubMed:22751317}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526698.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: microRNA 396 (miR396a or miR396b) negatively regulates growth-regulating factors (GRF1-4 and GRF7-9). Up-regulated in response to cyst nematode infection. {ECO:0000269\|PubMed:15200956, ECO:0000269\|PubMed:19453503, ECO:0000269\|PubMed:20023165, ECO:0000269\|PubMed:22419826}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526698.1	0.0	PREDICTED: growth-regulating factor 1-like isoform X1
Swissprot	O81001	0.0	GRF1_ARATH; Growth-regulating factor 1
TrEMBL	A0A087GSD1	0.0	A0A087GSD1_ARAAL; Uncharacterized protein
STRING	XP_010526698.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1454	28	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22840.1	1e-175	growth-regulating factor 1

Publications ? help Back to Top
Casadevall R,Rodriguez RE,Debernardi JM,Palatnik JF,Casati P Repression of growth regulating factors by the microRNA396 inhibits cell proliferation by UV-B radiation in Arabidopsis leaves. Plant Cell, 2013. 25(9): p. 3570-83 [PMID:24076976] Liu J,Rice JH,Chen N,Baum TJ,Hewezi T Synchronization of developmental processes and defense signaling by growth regulating transcription factors. PLoS ONE, 2014. 9(5): p. e98477 [PMID:24875638] Cao Y,Han Y,Jin Q,Lin Y,Cai Y Comparative Genomic Analysis of the GRF Genes in Chinese Pear (Pyrus bretschneideri Rehd), Poplar (Populous), Grape (Vitis vinifera), Arabidopsis and Rice (Oryza sativa). Front Plant Sci, 2016. 7: p. 1750 [PMID:27933074]