PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526537.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Nin-like
Protein Properties Length: 443aa    MW: 49622.3 Da    PI: 8.6162
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526537.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK92.33.6e-29224274252
          RWP-RK   2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                     ekei+le+l+++F++++kdAAk++gvc+T+LKr+CRq+GIkRWP+Rkik++
  XP_010526537.1 224 EKEITLEVLRQHFAGSLKDAAKSIGVCPTTLKRKCRQHGIKRWPSRKIKKV 274
                     79***********************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151916.563211294IPR003035RWP-RK domain
Gene3DG3DSA:1.10.10.602.4E-4222264IPR009057Homeodomain-like
PfamPF020424.9E-25227274IPR003035RWP-RK domain
Gene3DG3DSA:3.10.20.2405.8E-21351439No hitNo description
SuperFamilySSF542771.3E-20352439No hitNo description
SMARTSM006665.9E-23354440IPR000270PB1 domain
PROSITE profilePS5174524.082354440IPR000270PB1 domain
CDDcd064072.26E-35355439No hitNo description
PfamPF005649.6E-18355439IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MPPCHHRRQL QDPAAASEVA GHLQAICNSH GLPLALTWAP CLHHSGCISP VHSASFAADH  60
DSRCFLAAFS DHHLLSAADK KRCFTTEVAV FTKSSHPLSH YARISGLHSA LAVPLVSRAT  120
GEVELVLELF FPRVFSQRQT LVTQLNQRFW CFTHLVVDEE LAQEVIFATK QPTLVQESCP  180
KDVSLSWECQ REEEFKLTSG GEGESSSSWV YNNTVDRKRR TKVEKEITLE VLRQHFAGSL  240
KDAAKSIGVC PTTLKRKCRQ HGIKRWPSRK IKKVGHSLRK LQVVMDSVKE VEGSLHFTSF  300
YSTFPHIAAK SRPPSSSSSP DTSSTSTSTH SNIDPQEISP SPPLSAVTGK DSKGIRVKAT  360
FGESQARMRL QPHWQLKDLR LEIARRFSFD VSSNFSLKYL DDDREWVLLT CDADLEECID  420
ISRSSPSSRR ETIRLLVHQN PPP
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526537.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by nitrate. {ECO:0000269|PubMed:15375205}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526536.10.0PREDICTED: protein NLP3-like
RefseqXP_010526537.10.0PREDICTED: protein NLP3-like
SwissprotQ9SVF14e-90NLP3_ARATH; Protein NLP3
TrEMBLV4MK941e-126V4MK94_EUTSA; Uncharacterized protein
STRINGXP_010526536.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38340.18e-92Nin-like family protein
Publications ? help Back to Top
  1. Doidy J, et al.
    "Hit-and-Run" transcription: de novo transcription initiated by a transient bZIP1 "hit" persists after the "run".
    BMC Genomics, 2016. 17: p. 92
    [PMID:26843062]