PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526500.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family NAC
Protein Properties Length: 311aa    MW: 34470.9 Da    PI: 9.3311
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526500.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM110.81.5e-34792201128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.......s 80 
                     lp+G++F+Ptd+el+ e+L+ kv+g+       ++++  +i+   +i++++P++Lp  v+ + +  +fF++ +k+y+tg+rk+r+++       +
  XP_010526500.1  79 LPAGVKFDPTDQELL-EHLEGKVRGDArklhplIDEFIrTINGEnGICYTHPEKLP-GVTMDGTVRHFFHRPSKAYTTGTRKRRKVHtdsdvggE 171
                     799************.99*******996665552222224655547**********.555677899******************74434555557 PP

             NAM  81 gyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                      +W++tgk+++vl+ +g++ g kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_010526500.1 172 TRWHKTGKTRPVLV-GGRVRGYKKILVLYtnYGKQKKPEKTNWVMHQYHL 220
                     88************.9*************6658999************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.7E-3872239IPR003441NAC domain
PROSITE profilePS5100532.97479239IPR003441NAC domain
PfamPF023651.1E-1580220IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MTWCNDCSDV QTTERSTCTS PPSPAAAAAV APLPASYHKN LTANHFSDRH KACLIKTCPS  60
CGHHFKFHEQ AGIHDLPGLP AGVKFDPTDQ ELLEHLEGKV RGDARKLHPL IDEFIRTING  120
ENGICYTHPE KLPGVTMDGT VRHFFHRPSK AYTTGTRKRR KVHTDSDVGG ETRWHKTGKT  180
RPVLVGGRVR GYKKILVLYT NYGKQKKPEK TNWVMHQYHL GINEEEKEGE LVVSKVFFQT  240
QPRQCAGSLA GATAAKDHRH GRHIHYHHHG GGTAGAASVG EYYSNMPAVI SFDKTGVQSH  300
LAVHEAPSFI P
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-127922015140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526500.10.0PREDICTED: NAC domain-containing protein 73
SwissprotO494591e-159NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A078HCI71e-163A0A078HCI7_BRANA; BnaA01g08370D protein
TrEMBLA0A398AJV51e-163A0A398AJV5_BRACM; Uncharacterized protein
STRINGXP_010526500.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM20122881
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-155NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]