PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526304.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 901aa MW: 99370 Da PI: 4.9051

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526304.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.7e-28	556	606	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs ++kdAA++Lgvc+T+LKriCRq+GI RWP+Rki+++ XP_010526304.1 556 EKTVSLNVLQQHFSRSLKDAARSLGVCPTTLKRICRQHGITRWPYRKISKV 606 899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.405	545	626	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-26	558	606	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-23	790	887	No hit	No description
SMART	SM00666	5.1E-23	801	883	IPR000270	PB1 domain
PROSITE profile	PS51745	22.154	801	883	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-22	802	882	No hit	No description
Pfam	PF00564	1.5E-17	802	882	IPR000270	PB1 domain
CDD	cd06407	2.31E-34	802	882	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 901 aa Download sequence Send to blast
MEKSFASKRK EIDYSDSQEE LNDGLAGIDL SISNFDSENT LSPTSEFMNL ESFGGWSDSP 60 SVFNQYEPPT SRSMLSGSSA APFPDPPYAF CQEEGSYSGG EGSSMQHTVS HFDCSQDVSD 120 ADKPSSCQNY SSSYTSDHTI PMSVRHSLDE KMLKALCLFM ETSGEGILAQ IWSPMKMGDQ 180 FMLSTCNQSY LLDPKLSGYR EASRKFTFSA DAHQCSFPGL PGRVYISGLV EWTSNVIYYK 240 TAEYLRMKYA IDNEVRGSIA IPILEDTGKS CAVLELVTTR EKRNFTLELE SVCRALQAVD 300 LRTSTVPRIQ SLSGNQREAL AEIGNVLRAV CHAHRLPLAL TWIPCCYSKG ACGELVKVYG 360 SYSDGDCVLC VEDTYCYVYD TEMEGFMQAC LEHDLREGEG VAGKVLVSNQ AFFKSDVKTF 420 DISEYPLVQH ARKYGLNAAV AIKLRSTFTG HDVYVLELFL PVSMTGSLEQ QLLLDNLSGT 480 MQRICRTLRT ALDTESVHKG ATDVEIQDER RTSFPEMDIS RGSFQTIPRD SNNFSSHGKI 540 FSSISEPVMK KQSTSEKTVS LNVLQQHFSR SLKDAARSLG VCPTTLKRIC RQHGITRWPY 600 RKISKVNRSL RKMQSVIGSV QGVDTDFKYN PETGVFMATG HSIHESNAQN GGVAQEEDMA 660 QAQDSDKNNA EKLQEVGSTS QTTPGSFHEA DNVGNQPWSW VANQSGSDYD GCFTDKTRVE 720 IEIEIAKQPF VPKSSKAPAI TDDKARTFEP NQPISCSFSD SSNVAGGGAV NVRSSSTSVD 780 DLNSLRAQNS SSSGGESGST VVTVKATYND DTVRFKIDPS VGCSQIYREV GKRFELNEET 840 FQLKYLDDEE EWVMLVTDSD LHECLEILAG TGRHTVKFLV RDLPCPIGSS TGSIGYLGPC 900 P

Sequence ? help Back to Top

Protein Sequence Length: 901 aa Download sequence Send to blast

MEKSFASKRK EIDYSDSQEE LNDGLAGIDL SISNFDSENT LSPTSEFMNL ESFGGWSDSP  60
SVFNQYEPPT SRSMLSGSSA APFPDPPYAF CQEEGSYSGG EGSSMQHTVS HFDCSQDVSD  120
ADKPSSCQNY SSSYTSDHTI PMSVRHSLDE KMLKALCLFM ETSGEGILAQ IWSPMKMGDQ  180
FMLSTCNQSY LLDPKLSGYR EASRKFTFSA DAHQCSFPGL PGRVYISGLV EWTSNVIYYK  240
TAEYLRMKYA IDNEVRGSIA IPILEDTGKS CAVLELVTTR EKRNFTLELE SVCRALQAVD  300
LRTSTVPRIQ SLSGNQREAL AEIGNVLRAV CHAHRLPLAL TWIPCCYSKG ACGELVKVYG  360
SYSDGDCVLC VEDTYCYVYD TEMEGFMQAC LEHDLREGEG VAGKVLVSNQ AFFKSDVKTF  420
DISEYPLVQH ARKYGLNAAV AIKLRSTFTG HDVYVLELFL PVSMTGSLEQ QLLLDNLSGT  480
MQRICRTLRT ALDTESVHKG ATDVEIQDER RTSFPEMDIS RGSFQTIPRD SNNFSSHGKI  540
FSSISEPVMK KQSTSEKTVS LNVLQQHFSR SLKDAARSLG VCPTTLKRIC RQHGITRWPY  600
RKISKVNRSL RKMQSVIGSV QGVDTDFKYN PETGVFMATG HSIHESNAQN GGVAQEEDMA  660
QAQDSDKNNA EKLQEVGSTS QTTPGSFHEA DNVGNQPWSW VANQSGSDYD GCFTDKTRVE  720
IEIEIAKQPF VPKSSKAPAI TDDKARTFEP NQPISCSFSD SSNVAGGGAV NVRSSSTSVD  780
DLNSLRAQNS SSSGGESGST VVTVKATYND DTVRFKIDPS VGCSQIYREV GKRFELNEET  840
FQLKYLDDEE EWVMLVTDSD LHECLEILAG TGRHTVKFLV RDLPCPIGSS TGSIGYLGPC  900
P

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526304.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526304.1	0.0	PREDICTED: protein NLP8 isoform X2
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	XP_010526297.1	0.0	(Tarenaya hassleriana)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]