PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010526297.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

Nin-like

Protein Properties

Length: 902aa MW: 99498.1 Da PI: 4.9051

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010526297.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	88	7.7e-28	557	607	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l+++Fs ++kdAA++Lgvc+T+LKriCRq+GI RWP+Rki+++ XP_010526297.1 557 EKTVSLNVLQQHFSRSLKDAARSLGVCPTTLKRICRQHGITRWPYRKISKV 607 899*********************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.416	546	627	IPR003035	RWP-RK domain
Pfam	PF02042	8.5E-26	559	607	IPR003035	RWP-RK domain
SuperFamily	SSF54277	7.2E-23	791	888	No hit	No description
PROSITE profile	PS51745	22.154	802	884	IPR000270	PB1 domain
SMART	SM00666	5.1E-23	802	884	IPR000270	PB1 domain
CDD	cd06407	2.32E-34	803	883	No hit	No description
Pfam	PF00564	1.5E-17	803	883	IPR000270	PB1 domain
Gene3D	G3DSA:3.10.20.240	2.7E-22	803	883	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 902 aa Download sequence Send to blast
MEKSFASKRK EIDYSDSQEE LNDGLAGIDL SISNFDSENT LSPTSEFMNL ESFGGWSDSP 60 SVFNQYEPPT SRSMLSGSSA APFPDPPYAF CQEEGSYSGG EGSSMQHTVS HFDCSQDVSD 120 ADKPSSCQNY SSSYTSDHTI PMSVRHSLDE KMLKALCLFM ETSGEGILAQ IWSPMKMGDQ 180 FMLSTCNQSY LLDPKLSGYR EASRKFTFSA DAHQCSFPGL PGRVYISGLV EWTSNVIYYK 240 TAEYLRMKYA IDNEVRGSIA IPILEDTGKS CAVLELVTTR EKRNFTLELE SVCRALQAVD 300 LRTSTVPRIQ SLSGNQREAL AEIGNVLRAV CHAHRLPLAL TWIPCCYSKG ACGELVKVYG 360 SYSDGDCVLC VEDTYCYVYD TEMEGFMQAC LEHDLREGEG VAGKVLVSNQ AFFKSDVKTF 420 DISEYPLVQH ARKYGLNAAV AIKLRSTFTG HDVYVLELFL PVSMTGSLEQ QLLLDNLSGT 480 MQRICRTLRT ALDTESVHKG ATDVEIQDER RTSFPEMDIS RGSFQTIPRD SNNFSSHGKI 540 FSSISEPQVM KKQSTSEKTV SLNVLQQHFS RSLKDAARSL GVCPTTLKRI CRQHGITRWP 600 YRKISKVNRS LRKMQSVIGS VQGVDTDFKY NPETGVFMAT GHSIHESNAQ NGGVAQEEDM 660 AQAQDSDKNN AEKLQEVGST SQTTPGSFHE ADNVGNQPWS WVANQSGSDY DGCFTDKTRV 720 EIEIEIAKQP FVPKSSKAPA ITDDKARTFE PNQPISCSFS DSSNVAGGGA VNVRSSSTSV 780 DDLNSLRAQN SSSSGGESGS TVVTVKATYN DDTVRFKIDP SVGCSQIYRE VGKRFELNEE 840 TFQLKYLDDE EEWVMLVTDS DLHECLEILA GTGRHTVKFL VRDLPCPIGS STGSIGYLGP 900 CP

Sequence ? help Back to Top

Protein Sequence Length: 902 aa Download sequence Send to blast

MEKSFASKRK EIDYSDSQEE LNDGLAGIDL SISNFDSENT LSPTSEFMNL ESFGGWSDSP  60
SVFNQYEPPT SRSMLSGSSA APFPDPPYAF CQEEGSYSGG EGSSMQHTVS HFDCSQDVSD  120
ADKPSSCQNY SSSYTSDHTI PMSVRHSLDE KMLKALCLFM ETSGEGILAQ IWSPMKMGDQ  180
FMLSTCNQSY LLDPKLSGYR EASRKFTFSA DAHQCSFPGL PGRVYISGLV EWTSNVIYYK  240
TAEYLRMKYA IDNEVRGSIA IPILEDTGKS CAVLELVTTR EKRNFTLELE SVCRALQAVD  300
LRTSTVPRIQ SLSGNQREAL AEIGNVLRAV CHAHRLPLAL TWIPCCYSKG ACGELVKVYG  360
SYSDGDCVLC VEDTYCYVYD TEMEGFMQAC LEHDLREGEG VAGKVLVSNQ AFFKSDVKTF  420
DISEYPLVQH ARKYGLNAAV AIKLRSTFTG HDVYVLELFL PVSMTGSLEQ QLLLDNLSGT  480
MQRICRTLRT ALDTESVHKG ATDVEIQDER RTSFPEMDIS RGSFQTIPRD SNNFSSHGKI  540
FSSISEPQVM KKQSTSEKTV SLNVLQQHFS RSLKDAARSL GVCPTTLKRI CRQHGITRWP  600
YRKISKVNRS LRKMQSVIGS VQGVDTDFKY NPETGVFMAT GHSIHESNAQ NGGVAQEEDM  660
AQAQDSDKNN AEKLQEVGST SQTTPGSFHE ADNVGNQPWS WVANQSGSDY DGCFTDKTRV  720
EIEIEIAKQP FVPKSSKAPA ITDDKARTFE PNQPISCSFS DSSNVAGGGA VNVRSSSTSV  780
DDLNSLRAQN SSSSGGESGS TVVTVKATYN DDTVRFKIDP SVGCSQIYRE VGKRFELNEE  840
TFQLKYLDDE EEWVMLVTDS DLHECLEILA GTGRHTVKFL VRDLPCPIGS STGSIGYLGP  900
CP

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010526297.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010526297.1	0.0	PREDICTED: protein NLP8 isoform X1
Swissprot	O22864	0.0	NLP8_ARATH; Protein NLP8
TrEMBL	R0FUG6	0.0	R0FUG6_9BRAS; Uncharacterized protein
STRING	XP_010526297.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G43500.2	0.0	Nin-like family protein

Publications ? help Back to Top
Yan D, et al. NIN-like protein 8 is a master regulator of nitrate-promoted seed germination in Arabidopsis. Nat Commun, 2016. 7: p. 13179 [PMID:27731416]