PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526179.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 989aa    MW: 109742 Da    PI: 6.0707
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526179.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding58.61.4e-183581148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g WT+eEd++l +av+ + g++Wk+Ia+ ++ +Rt+ qc +rwqk+l
   XP_010526179.1 35 KGQWTPEEDDILRKAVEHFKGKNWKKIAESFQ-NRTDVQCLHRWQKVL 81
                     799*****************************.************986 PP
2Myb_DNA-binding58.31.8e-1887133148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+W++eEde+++d+v+++G++ W+t+ar+++ gR +kq ++rw+++l
   XP_010526179.1  87 KGPWSKEEDERIIDLVNKYGPKKWSTVARHLP-GRIGKQXRERWHNHL 133
                      79******************************.*************97 PP
3Myb_DNA-binding43.29.1e-14139181145
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                      + +W++eE++ l++a++ +G++ W+   + ++ gR+++ +k++w+
   XP_010526179.1 139 KEAWSQEEELTLIRAHQIYGNR-WAELTKFLP-GRSDNGIKNHWN 181
                      579*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.9573081IPR017930Myb domain
SMARTSM007176.7E-163483IPR001005SANT/Myb domain
PfamPF002497.1E-173581IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.609.1E-233689IPR009057Homeodomain-like
SuperFamilySSF466891.08E-153691IPR009057Homeodomain-like
CDDcd001676.71E-143881No hitNo description
PROSITE profilePS5129431.00782137IPR017930Myb domain
SuperFamilySSF466891.95E-2884180IPR009057Homeodomain-like
SMARTSM007175.2E-1686135IPR001005SANT/Myb domain
PfamPF002495.6E-1687133IPR001005SANT/Myb domain
CDDcd001671.61E-1489133No hitNo description
Gene3DG3DSA:1.10.10.605.2E-2590136IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.4E-20137188IPR009057Homeodomain-like
PROSITE profilePS5129417.198138188IPR017930Myb domain
SMARTSM007176.2E-13138186IPR001005SANT/Myb domain
PfamPF002492.9E-12139182IPR001005SANT/Myb domain
CDDcd001674.55E-10141181No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 989 aa     Download sequence    Send to blast
MKSEMTTSNP QEGSSHGVQK GRDGRTYGPA RRSTKGQWTP EEDDILRKAV EHFKGKNWKK  60
IAESFQNRTD VQCLHRWQKV LNPELVKGPW SKEEDERIID LVNKYGPKKW STVARHLPGR  120
IGKQXRERWH NHLNPSINKE AWSQEEELTL IRAHQIYGNR WAELTKFLPG RSDNGIKNHW  180
NSSVKKKLDM YLASGLLDQF QSLPLFPPQN MSNPSSASRV QSSGDEGSTK PGADAEESEC  240
SQGSTTFGCS QSTNGLPDEV KPVNEQSFLS EMPCGMEKQT SKPTSSAEPH CPTFDDIMFI  300
VPEIPCEAEY SAKFPNSNCS HEIETSTAME HQFNLQDGSK DAKQELGQDS SRMMTHCMDV  360
KERHEVIGIV QTSVLRASPS MPSLDKDPPP QTQLLLTDEG CCRVLFPDNM KDGCTSSGAF  420
EQSSSVVSFQ ENKGSFCHLS SENQAHETGN ILASSCHPTS LDVLEGGRHV DLLLTADKDL  480
RLDCKKPDQS CHLIGAKESE GKKDREADFV HTDRPENPHG NGDYGGNADL QELSYIPKDS  540
LKLVPVDSFS SPPRVNQLSF PIDDKQNGKD KGTLCYEPPR FPSADIPFFS CDLAQSSSDL  600
QQEYSPFGIR QFMVSSMNCM TPFRLWDSPS RDDTTDVVLK DAAKTFNGPP SILKKRHCDL  660
LSPLLDRRKD KKLERGVASS LAKDFPARDD CKSSLLSEYP DNKNRCATPC EGKENRGCET  720
GGLGQELVSD VKDLKETSDS HDKAEGMVSI TIVKALKEGD VSVQNDWETS GILVEHNENE  780
LQQFSPDKNM NSGTKTPTNI HKRSIGIPRQ GIPSELPCTA ESIPSSATKG NKTDTAENNI  840
NFENLGTFNG TPFRKSLESP SAWKSPLFFS SFFSSPRFPT EVALEGFGYF LSPGERSYDA  900
LGLMKHLSEH TAATYADALD VLGNDTPETI LSKRQQRKST HGKENRHQPR DQPGNHSHVS  960
DSTITVERRT LDFSDCGTPG KAKASFSGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-67351886159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-67351886159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1665672DRRKDKKL
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds 5'-AACGG-3' motifs in gene promoters (PubMed:21862669). Transcription activator involved in the regulation of cytokinesis, probably via the activation of several G2/M phase-specific genes transcription (e.g. KNOLLE) (PubMed:17287251, PubMed:21862669). Transcription repressor that regulates organ growth. Binds to the promoters of G2/M-specific genes and to E2F target genes to prevent their expression in post-mitotic cells and to restrict the time window of their expression in proliferating cells (PubMed:26069325). Required for the maintenance of diploidy (PubMed:21862669). {ECO:0000269|PubMed:17287251, ECO:0000269|PubMed:21862669, ECO:0000269|PubMed:26069325}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526179.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Constant levels during cell cycle. Activated by CYCB1. {ECO:0000269|PubMed:17287251}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526179.10.0PREDICTED: myb-related protein 3R-1-like isoform X1
SwissprotQ9S7G70.0MB3R1_ARATH; Transcription factor MYB3R-1
TrEMBLD7M9P90.0D7M9P9_ARALL; PC-MYB1
STRINGXP_010526179.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM46742649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32730.20.0Homeodomain-like protein
Publications ? help Back to Top
  1. Kobayashi K, et al.
    Transcriptional repression by MYB3R proteins regulates plant organ growth.
    EMBO J., 2015. 34(15): p. 1992-2007
    [PMID:26069325]