PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010526005.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 376aa    MW: 42199.5 Da    PI: 6.917
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010526005.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.71e-13351141498
                     T-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
              B3  14 grlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                     +rl +p kf  ++++k   +  +tl+++sg +++v l  +  s++   +++GW eF++++ L+e+D +vFk++g s f   v +f+
  XP_010526005.1  35 RRLPIPQKFSVHCKKK--LPLVVTLKSPSGVTYNVGL--EAESNGaLAFRNGWLEFARDHLLEENDLLVFKFNGVSHF--EVLIFD 114
                     6899*****9999855..8899***************..666666699***********************9999999..888776 PP
2B347.63e-15231324194
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-..SSSEE.. CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkld..grsefel 92 
                     f+ v+++s+v+++  +++pkk   ++ +++++  +++    +  +W+++++y+++++   + + GWk+Fv+ n+L+egD++vF+ +  g++   l
  XP_010526005.1 231 FLVVMKHSHVTSKFFMTMPKKWSVKYLSDETQ--EVV-LRIDQTTWKMTFSYCRSRNYgGLSGVGWKKFVSGNNLNEGDILVFEPTnfGTKPLLL 322
                     7889**********************777666..455.456899******99777777567789********************54223344445 PP

                     EE CS
              B3  93 vv 94 
                      v
  XP_010526005.1 323 DV 324
                     55 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.04E-1721114IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.15322116IPR003340B3 DNA binding domain
CDDcd100171.94E-1524114No hitNo description
Gene3DG3DSA:2.40.330.102.8E-1624114IPR015300DNA-binding pseudobarrel domain
SMARTSM010191.5E-1425116IPR003340B3 DNA binding domain
PfamPF023621.8E-1135114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-15229328IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.0E-11231330IPR003340B3 DNA binding domain
CDDcd100179.27E-19231328No hitNo description
PfamPF023621.6E-13231322IPR003340B3 DNA binding domain
SuperFamilySSF1019361.16E-16231320IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.182231330IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MGKNCDVCVE WEEEMYWTHF QSIHFSQFFL PGFDRRLPIP QKFSVHCKKK LPLVVTLKSP  60
SGVTYNVGLE AESNGALAFR NGWLEFARDH LLEENDLLVF KFNGVSHFEV LIFDGKSLCE  120
KATSYFVKKC CHAGSTSERH GKRKAADYSA TSGAPVNHLI GDVYTTPIHQ SVKSSAGNGQ  180
EEDISFDFDT TPNQRPVVSS AERRRSGNSK SSANGSALLS LAEAATSQDG FLVVMKHSHV  240
TSKFFMTMPK KWSVKYLSDE TQEVVLRIDQ TTWKMTFSYC RSRNYGGLSG VGWKKFVSGN  300
NLNEGDILVF EPTNFGTKPL LLDVGIFRVA EVGTPIMATH LQDVEVQTLQ HQEGNDHIEG  360
QTQQQQEGND HMYKYN
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010526005.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010526005.10.0PREDICTED: B3 domain-containing protein REM16-like
SwissprotQ8RYD11e-110REM16_ARATH; B3 domain-containing protein REM16
TrEMBLA0A1P8B3931e-110A0A1P8B393_ARATH; AP2/B3-like transcriptional factor family protein
STRINGXP_010526005.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM104282335
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.11e-105B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]