PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525921.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 503aa    MW: 57484.9 Da    PI: 10.1582
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525921.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3512.7e-1623981395
                    TT-EE--HHH.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3 13 sgrlvlpkkfaeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95
                    ++ l +p kf+++h +g  ++++t +l++  s ++Wevk+  ++++    +t+GWk+F+ +++ + gDf+vF+++g+  f  +v+
  XP_010525921.1 23 HNFLNIPVKFFQKHiEG-RTGNMTAKLRSdVSYKTWEVKM--DGRR----FTGGWKDFAVDHDFRIGDFIVFRYEGNLVF--HVT 98
                    56799*********644.57999*****96788*******..9998....9**********************9986555..555 PP
2B358.71.1e-181592362099
                     HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
              B3  20 kkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                     + fa+++g+++ +  ++ l++e+g sW+++l+ r ++g++++ +GW +F++ang k+g f+ Fk+++ +++++v++++ k
  XP_010525921.1 159 RGFARSNGLEN-RWCEIDLMNEHGSSWTLYLRRRATDGQVYIVRGWTSFCQANGFKAGSFCKFKMVR-NGTRPVIQLCPK 236
                     56999998875.5569***************99999999*************************987.78889**99986 PP
3B347.43.5e-15284376198
                     EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                     f+k  ++++ l++g+l+lp +f++++g+k  +s+ +tl+d+ g +W  +l   k+++ ++++   ++F kang+k g++++++l++  ++++ ++
  XP_010525921.1 284 FLKLNLTPSILRTGQLRLPTRFMSSNGIK--KSVNITLMDKYGVEWLSYLHLVKGQQLFYIS--CRDFIKANGVKKGETFTLELIW-GDKTPIFR 373
                     889999********************988..7899***************777777778887..*********************9.77779998 PP

                     EE- CS
              B3  96 vfr 98 
                     ++ 
  XP_010525921.1 374 FCP 376
                     885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-198105IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.6E-229105IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.82911103IPR003340B3 DNA binding domain
CDDcd100174.43E-1812100No hitNo description
SMARTSM010193.8E-2314103IPR003340B3 DNA binding domain
PfamPF023628.6E-112392IPR003340B3 DNA binding domain
SMARTSM010192.0E-22145237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.9E-16146236IPR015300DNA-binding pseudobarrel domain
CDDcd100174.28E-17159235No hitNo description
SuperFamilySSF1019361.82E-17159239IPR015300DNA-binding pseudobarrel domain
PfamPF023625.7E-17159236IPR003340B3 DNA binding domain
PROSITE profilePS5086312.055173237IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.1E-15278377IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.35E-16279376IPR015300DNA-binding pseudobarrel domain
CDDcd100172.03E-13282376No hitNo description
PROSITE profilePS508639.615284378IPR003340B3 DNA binding domain
SMARTSM010191.6E-21284378IPR003340B3 DNA binding domain
PfamPF023628.8E-16284376IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 503 aa     Download sequence    Send to blast
MADPDSVSLS KHHFFQPLLP GFHNFLNIPV KFFQKHIEGR TGNMTAKLRS DVSYKTWEVK  60
MDGRRFTGGW KDFAVDHDFR IGDFIVFRYE GNLVFHVTGF GPSCCNLQYS SSSHDNETNS  120
HEHTGNDSRK EKKARKNLKT GSKYTCLEVT ASNLRLDRRG FARSNGLENR WCEIDLMNEH  180
GSSWTLYLRR RATDGQVYIV RGWTSFCQAN GFKAGSFCKF KMVRNGTRPV IQLCPKEPSH  240
NTDNTEEGSE AIERKSCSSK PKSARGSSKR KEGRAPASSG QHRFLKLNLT PSILRTGQLR  300
LPTRFMSSNG IKKSVNITLM DKYGVEWLSY LHLVKGQQLF YISCRDFIKA NGVKKGETFT  360
LELIWGDKTP IFRFCPEIQQ EEKGTETMAD VNALKRRTHE TVQTRTAAEK PLSEAEVKAH  420
KRVRVRDPED RPNHQDDWDT DSTTRMTSGT ASESSRRTRS NPITKAKQNI TDTLTAVRQF  480
REVLDTKERN LDAVLRELDA FGM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1394398KRRTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525921.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525921.10.0PREDICTED: B3 domain-containing protein REM3-like isoform X2
STRINGXP_010525920.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31630.12e-97B3 family protein