PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525861.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 297aa MW: 33163 Da PI: 4.7156 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.1 | 3.9e-12 | 19 | 90 | 2 | 74 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt + l L++ + +e + +++ + ++We +s+++ + ++r+ +qC+ kw+ l yk ik++e++ + XP_010525861.1 19 WTVKDCLILVNEVAAVEADCSNALSSFQKWEIISENCNALDVHRTLNQCRRKWDTLLSGYKLIKQWESQA-GD 90 9999***************************************************************985.23 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-11 | 18 | 116 | No hit | No description |
PROSITE profile | PS50090 | 6.62 | 19 | 75 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 297 aa Download sequence Send to blast |
MEGGTSGSRR TRSQVAPDWT VKDCLILVNE VAAVEADCSN ALSSFQKWEI ISENCNALDV 60 HRTLNQCRRK WDTLLSGYKL IKQWESQAGD GCSYWSLSSE SRKRLELPGI FENGLYEAID 120 AVVMVQEDKA GTEPDSDPDA QEDVNKLDAI AEPGPKRSRP RAMALEEKLS RKARKEVAAR 180 KKPERRSNQT QEKDREQQRM ELQSENEEEK TIESCTEGVK SIEEEAEAMA AKLGEKAELI 240 HAIVAGNHPS EDGETGDGGG NELRMKLVRR QGDELISCLG EIVDTLHRFR GLAQGFE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525861.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019056898.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3 isoform X2 | ||||
TrEMBL | V4P3R9 | 1e-110 | V4P3R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010525857.1 | 0.0 | (Tarenaya hassleriana) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 1e-90 | sequence-specific DNA binding transcription factors |