PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525859.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 298aa    MW: 33234 Da    PI: 4.7156
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525859.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix38.14e-121990274
        trihelix  2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74
                    Wt +  l L++ +  +e + +++ +  ++We +s+++ +  ++r+ +qC+ kw+ l   yk ik++e++   +
  XP_010525859.1 19 WTVKDCLILVNEVAAVEADCSNALSSFQKWEIISENCNALDVHRTLNQCRRKWDTLLSGYKLIKQWESQA-GD 90
                    9999***************************************************************985.23 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.0E-1118116No hitNo description
PROSITE profilePS500906.621975IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009506Cellular Componentplasmodesma
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MEGGTSGSRR TRSQVAPDWT VKDCLILVNE VAAVEADCSN ALSSFQKWEI ISENCNALDV  60
HRTLNQCRRK WDTLLSGYKL IKQWESQAGD GCSYWSLSSE SRKRLELPGI FENGLYEAID  120
AVVMVQEDKA GTEPDSDPDA QEDVNKLDAI AEPAGPKRSR PRAMALEEKL SRKARKEVAA  180
RKKPERRSNQ TQEKDREQQR MELQSENEEE KTIESCTEGV KSIEEEAEAM AAKLGEKAEL  240
IHAIVAGNHP SEDGETGDGG GNELRMKLVR RQGDELISCL GEIVDTLHRF RGLAQGFE
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525859.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525858.10.0PREDICTED: trihelix transcription factor ASR3 isoform X1
RefseqXP_010525859.10.0PREDICTED: trihelix transcription factor ASR3 isoform X1
RefseqXP_010525860.10.0PREDICTED: trihelix transcription factor ASR3 isoform X1
TrEMBLV4P3R91e-111V4P3R9_EUTSA; Uncharacterized protein
STRINGXP_010525857.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31270.11e-90sequence-specific DNA binding transcription factors