PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525857.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | Trihelix | ||||||||
Protein Properties | Length: 298aa MW: 33234 Da PI: 4.7156 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 38.1 | 4e-12 | 19 | 90 | 2 | 74 |
trihelix 2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 Wt + l L++ + +e + +++ + ++We +s+++ + ++r+ +qC+ kw+ l yk ik++e++ + XP_010525857.1 19 WTVKDCLILVNEVAAVEADCSNALSSFQKWEIISENCNALDVHRTLNQCRRKWDTLLSGYKLIKQWESQA-GD 90 9999***************************************************************985.23 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 4.0E-11 | 18 | 116 | No hit | No description |
PROSITE profile | PS50090 | 6.62 | 19 | 75 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009506 | Cellular Component | plasmodesma |
Sequence ? help Back to Top |
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Protein Sequence Length: 298 aa Download sequence Send to blast |
MEGGTSGSRR TRSQVAPDWT VKDCLILVNE VAAVEADCSN ALSSFQKWEI ISENCNALDV 60 HRTLNQCRRK WDTLLSGYKL IKQWESQAGD GCSYWSLSSE SRKRLELPGI FENGLYEAID 120 AVVMVQEDKA GTEPDSDPDA QEDVNKLDAI AEPAGPKRSR PRAMALEEKL SRKARKEVAA 180 RKKPERRSNQ TQEKDREQQR MELQSENEEE KTIESCTEGV KSIEEEAEAM AAKLGEKAEL 240 IHAIVAGNHP SEDGETGDGG GNELRMKLVR RQGDELISCL GEIVDTLHRF RGLAQGFE |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525857.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525858.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3 isoform X1 | ||||
Refseq | XP_010525859.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3 isoform X1 | ||||
Refseq | XP_010525860.1 | 0.0 | PREDICTED: trihelix transcription factor ASR3 isoform X1 | ||||
TrEMBL | V4P3R9 | 1e-111 | V4P3R9_EUTSA; Uncharacterized protein | ||||
STRING | XP_010525857.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM12154 | 23 | 28 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31270.1 | 1e-90 | sequence-specific DNA binding transcription factors |