PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525344.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bHLH

Protein Properties

Length: 319aa MW: 35948.4 Da PI: 4.6398

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525344.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	38.6	1.9e-12	171	214	6	54
HHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+r+N++++ Lr+++Pk + K++ +iL A++Y+k+L XP_010525344.1 171 LMAERRRRKRLNDRLSMLRSIVPKiS------KMDRTSILGDAIDYMKEL 214 589*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.643	165	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	2.36E-16	168	232	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.6E-12	171	220	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	8.51E-5	172	214	No hit	No description
Gene3D	G3DSA:4.10.280.10	7.5E-17	172	228	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.7E-10	172	214	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence Send to blast
MELTEMSVLE ELLAPRRTEN NLVNNGGFIT SDQIFTNSWN LDYYCFNNNP LLDHDDTTIY 60 SSSLMDLISP ALPAPLLNQP PPLVTGFDYP LLDALQEMME LSSSSSPPLI LSQTHQEDNN 120 DNIINNNNNM AYSSPLMEES RSFSVGYCGG RETNKKNSKS KKLEGQPSKN LMAERRRRKR 180 LNDRLSMLRS IVPKISKMDR TSILGDAIDY MKELLDKINK LQEEEHELGS GNSSCSNSHD 240 DSKLFADLND LNAKEATVRN SPKFEVERRE SDTRIDMCCS PRPGLLLSTV NTLETLGLEI 300 QRCVISCFSD FSMHASCSE

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	173	180	ERRRRKRL

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. May be involved in the differentiation of stomatal guard cells. {ECO:0000269\|PubMed:17088607}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525344.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010519174.1	0.0	PREDICTED: transcription factor bHLH93-like
Refseq	XP_010525344.2	0.0	PREDICTED: transcription factor bHLH93-like
Swissprot	Q9LSL1	1e-118	BH093_ARATH; Transcription factor bHLH93
TrEMBL	A0A3P5YIV8	1e-122	A0A3P5YIV8_BRACM; Uncharacterized protein
TrEMBL	M4E6K0	1e-122	M4E6K0_BRARP; Uncharacterized protein
STRING	XP_010519174.1	0.0	(Tarenaya hassleriana)
STRING	XP_010525344.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2043	28	78

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G65640.1	1e-113	beta HLH protein 93

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Sharma N, et al. NO FLOWERING IN SHORT DAY (NFL) is a bHLH transcription factor that promotes flowering specifically under short-day conditions in Arabidopsis. Development, 2016. 143(4): p. 682-90 [PMID:26758694] Chen YS, et al. Two MYB-related transcription factors play opposite roles in sugar signaling in Arabidopsis. Plant Mol. Biol., 2017. 93(3): p. 299-311 [PMID:27866313] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]