PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010525316.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

CPP

Protein Properties

Length: 651aa MW: 70803 Da PI: 4.7818

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010525316.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	51.1	2.7e-16	367	405	2	40
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNke 40 ++k+CnCkkskClk+YCeCfaag++C e C+C dC+Nk XP_010525316.1 367 SCKRCNCKKSKCLKLYCECFAAGVYCIEPCSCVDCFNKP 405 689**********************************96 PP
2	TCR	52.3	1.1e-16	452	490	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++k+gCnCkks+ClkkYCeCf+ g+ Cs +C+Ce+CkN XP_010525316.1 452 RHKRGCNCKKSSCLKKYCECFQGGVGCSVNCRCEGCKNA 490 589***********************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	2.3E-19	366	407	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	37.6	367	492	IPR005172	CRC domain
Pfam	PF03638	7.1E-12	369	404	IPR005172	CRC domain
SMART	SM01114	1.7E-17	452	493	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	4.0E-12	454	490	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 651 aa Download sequence Send to blast
MDTPQKTAAQ IGTPISKSKF EDSPVFNYIN SLSPIKSVKS IPIAQTFGSL SFSSPPSVFT 60 SPHVNSHNES RFFRSHPPPK PEAKSRDGSS AIEEVVTAPE NFSAEASMEE EEAASIEPSN 120 GNFETEPIGD RDSSEVVAMD LQKMCNVKSS KNDTPDWESL ISDSTDLLIF SSPNDSEAFR 180 DLIQPHANNF TSDDPSNGED NESAESDSTD LLIFSSPNDS EAFRDLIQPH ANNFTSDDPS 240 NGEDNESAEA VSNFHRGLRR RCLDFVSPSE PSSRCILPSI GLHLNAIAMS SKDSKASLLN 300 EYSFPGKIHV SLPGANTHSK ENVQETRDED ASQEVEDVSK ASVSEELNPS SPKKKRRKFD 360 QGGEGESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD CFNKPIHEDT VLATRKQIES 420 RNPLAFAPKV IRSSDPISEA GDDASKTPAS ARHKRGCNCK KSSCLKKYCE CFQGGVGCSV 480 NCRCEGCKNA FGRKDGSSGI GSEGEQEEEN DTSEKYVTAK AQQNPEIFNE EEQNQSSGLP 540 STPLPLYRQP LVQLPFPSNN QTVSQSLLGA GSSSSRQFNS FETISEDGTE DDMPEILVRS 600 PIPTVKAVSP NSKRVSPPNL DSSGSILGRR NGGRKLILQS IPSFPSLTPH Q

Sequence ? help Back to Top

Protein Sequence Length: 651 aa Download sequence Send to blast

MDTPQKTAAQ IGTPISKSKF EDSPVFNYIN SLSPIKSVKS IPIAQTFGSL SFSSPPSVFT  60
SPHVNSHNES RFFRSHPPPK PEAKSRDGSS AIEEVVTAPE NFSAEASMEE EEAASIEPSN  120
GNFETEPIGD RDSSEVVAMD LQKMCNVKSS KNDTPDWESL ISDSTDLLIF SSPNDSEAFR  180
DLIQPHANNF TSDDPSNGED NESAESDSTD LLIFSSPNDS EAFRDLIQPH ANNFTSDDPS  240
NGEDNESAEA VSNFHRGLRR RCLDFVSPSE PSSRCILPSI GLHLNAIAMS SKDSKASLLN  300
EYSFPGKIHV SLPGANTHSK ENVQETRDED ASQEVEDVSK ASVSEELNPS SPKKKRRKFD  360
QGGEGESCKR CNCKKSKCLK LYCECFAAGV YCIEPCSCVD CFNKPIHEDT VLATRKQIES  420
RNPLAFAPKV IRSSDPISEA GDDASKTPAS ARHKRGCNCK KSSCLKKYCE CFQGGVGCSV  480
NCRCEGCKNA FGRKDGSSGI GSEGEQEEEN DTSEKYVTAK AQQNPEIFNE EEQNQSSGLP  540
STPLPLYRQP LVQLPFPSNN QTVSQSLLGA GSSSSRQFNS FETISEDGTE DDMPEILVRS  600
PIPTVKAVSP NSKRVSPPNL DSSGSILGRR NGGRKLILQS IPSFPSLTPH Q

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	2e-16	371	489	14	120	Protein lin-54 homolog
5fd3_B	2e-16	371	489	14	120	Protein lin-54 homolog
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	352	356	KKKRR
2	352	357	KKKRRK
3	353	357	KKRRK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable floral-specific cell division component, required for proper organ formation in flowers. Regulates the floral meristem cell division and the inflorescence meristem organization. Plays a role in development of both male and female reproductive tissues. {ECO:0000269\|PubMed:10769244, ECO:0000269\|PubMed:10769245, ECO:0000269\|PubMed:9043081, ECO:0000269\|PubMed:9725857}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010525316.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019056707.1	0.0	PREDICTED: protein tesmin/TSO1-like CXC 2
Swissprot	Q9LUI3	0.0	TSO1_ARATH; CRC domain-containing protein TSO1
TrEMBL	R0F1B1	0.0	R0F1B1_9BRAS; Uncharacterized protein
STRING	XP_010525316.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM1467	28	91

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G14770.1	0.0	TESMIN/TSO1-like CXC 2

Publications ? help Back to Top
Lu T,Dou Y,Zhang C Fuzzy clustering of CPP family in plants with evolution and interaction analyses. BMC Bioinformatics, 2013. 14 Suppl 13: p. S10 [PMID:24268301] Xie W, et al. Exploring potential new floral organ morphogenesis genes of Arabidopsis thaliana using systems biology approach. Front Plant Sci, 2015. 6: p. 829 [PMID:26528302] Wang W,Sijacic P,Xu P,Lian H,Liu Z Arabidopsis TSO1 and MYB3R1 form a regulatory module to coordinate cell proliferation with differentiation in shoot and root. Proc. Natl. Acad. Sci. U.S.A., 2018. 115(13): p. E3045-E3054 [PMID:29535223]