PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525265.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB_related | ||||||||
Protein Properties | Length: 233aa MW: 26408.5 Da PI: 4.5555 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 41.6 | 2.8e-13 | 41 | 94 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48 ++W+t+E++ll++avk++G ++W+++a +++ + t+ +ck+++++++ XP_010525265.1 41 QSWSTWEELLLACAVKRHGFHDWDSVAMEVQsrsslprfL-TTAQNCKHKYRDLK 94 78*******************************9999975.49********9986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 9.705 | 35 | 98 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.3E-7 | 35 | 95 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.34E-7 | 35 | 96 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 3.2E-8 | 39 | 96 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.2E-13 | 41 | 94 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 8.08E-9 | 42 | 94 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MSGFDGETFT KSTSVKYDII NYSCRDNHTG DDNIDQRKHS QSWSTWEELL LACAVKRHGF 60 HDWDSVAMEV QSRSSLPRFL TTAQNCKHKY RDLKRRFEDD GVGDNETEDG DDKADNIPWL 120 NQLRGLRVAE LRRDLQRYDV SILSLESKVK KLEEERDRSV GCQKPDLDDD SKGERSENDV 180 TEPARPNTVM AEEKESDREN GSINESNSTA SGGKLAGDGD ETSRAREDSG NPD |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525265.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525265.1 | 1e-172 | PREDICTED: uncharacterized protein LOC104803086, partial | ||||
TrEMBL | A0A1J3F826 | 2e-69 | A0A1J3F826_NOCCA; Uncharacterized protein | ||||
TrEMBL | A0A1J3HDA4 | 2e-69 | A0A1J3HDA4_NOCCA; Uncharacterized protein | ||||
TrEMBL | A0A1J3K556 | 2e-69 | A0A1J3K556_NOCCA; Uncharacterized protein | ||||
STRING | XP_010525265.1 | 1e-171 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4123 | 19 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G44430.1 | 1e-53 | DNA-binding bromodomain-containing protein |