PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010525258.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | MYB | ||||||||
Protein Properties | Length: 199aa MW: 22959 Da PI: 9.9094 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 58.4 | 1.7e-18 | 10 | 57 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g WT eEd +l d+vk +G+g+W++Ia++ g++R++k+c++rw +yl XP_010525258.1 10 KGLWTVEEDRILTDYVKAHGKGHWNRIAKKTGLKRCGKSCRLRWMNYL 57 678*******************************************97 PP | |||||||
2 | Myb_DNA-binding | 59.7 | 6.3e-19 | 63 | 108 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g++T +E++l+v+++k+lG++ W++Ia++++ gRt++q+k++w+++l XP_010525258.1 63 KGNFTDQEEDLIVRLHKLLGKR-WSLIAKRVP-GRTDNQVKNYWNTHL 108 79********************.*********.************996 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 18.319 | 5 | 57 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 2.61E-30 | 8 | 104 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 9.2E-16 | 9 | 59 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.0E-16 | 10 | 57 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.9E-25 | 11 | 64 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.91E-12 | 13 | 57 | No hit | No description |
PROSITE profile | PS51294 | 28.074 | 58 | 112 | IPR017930 | Myb domain |
SMART | SM00717 | 3.6E-18 | 62 | 110 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.3E-17 | 63 | 108 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-27 | 65 | 112 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.52E-13 | 65 | 108 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 199 aa Download sequence Send to blast |
MRFRKSEYKK GLWTVEEDRI LTDYVKAHGK GHWNRIAKKT GLKRCGKSCR LRWMNYLSPN 60 VKKGNFTDQE EDLIVRLHKL LGKRWSLIAK RVPGRTDNQV KNYWNTHLSK KLGIRDQTTR 120 KSINGDAHES PTQASADKFS NVNDGWLIGD TNRGVLDQFQ ALPTGEGCYM DSPWIHHDDG 180 GFDLSTLNTM MDFIDGDIF |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-28 | 10 | 112 | 7 | 108 | B-MYB |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator, when associated with BHLH2/EGL3/MYC146 or BHLH12/MYC1. Involved in epidermal cell fate specification in roots and hypocotyl. Together with GL3 or BHLH2, promotes the formation of non-hair developing cells (atrichoblasts) et the N position in root epidermis. Regulates stomata spatial distribution in hypocotyls. Binds to the WER-binding sites (WBS) promoter regions and activates the transcription of target genes such as GL2 and of CPC. {ECO:0000269|PubMed:10589676, ECO:0000269|PubMed:11585796, ECO:0000269|PubMed:14627722, ECO:0000269|PubMed:15361138, ECO:0000269|PubMed:15795220, ECO:0000269|PubMed:16207757}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010525258.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Transcriptional activation correlates with reduced histone acetylation on H3 and H4 mediated by HDA18 in N cells. Repressed by CPC in hair cells (H position). {ECO:0000269|PubMed:11910008, ECO:0000269|PubMed:16176989}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525258.1 | 1e-148 | PREDICTED: transcription factor WER-like | ||||
Swissprot | Q9SEI0 | 2e-89 | WER_ARATH; Transcription factor WER | ||||
TrEMBL | A0A384KIP7 | 5e-87 | A0A384KIP7_ARATH; WER1 | ||||
TrEMBL | C0SVP6 | 5e-87 | C0SVP6_ARATH; Uncharacterized protein At5g14750 (Fragment) | ||||
STRING | XP_010525258.1 | 1e-147 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G14750.1 | 8e-92 | myb domain protein 66 |