PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525159.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family LBD
Protein Properties Length: 262aa    MW: 28082.8 Da    PI: 7.4069
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525159.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26093.81.9e-2941081100
          DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                     +C++C+vlr++C+++C ++p++     p++q++++ +++k++G++ +++l++a p++ r+++++sl+ eA+ r+ +P+yG+vg++++++++l+q+
  XP_010525159.1   4 SCNGCRVLRKGCSENCSIRPCLawiksPDAQANATVFLAKFYGRAGLMNLINAGPDHLRPAIFRSLLHEACGRIVNPIYGSVGLLWSGSWHLCQA 98 
                     6*************************999****************************************************************** PP

          DUF260  91 kaelallkee 100
                     ++e++l +e+
  XP_010525159.1  99 AVEAVLKGEP 108
                     ***9988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0381552.1E-1051262IPR017414LOB domain-containing protein 10/36/41
PROSITE profilePS5089116.4173109IPR004883Lateral organ boundaries, LOB
PfamPF031951.7E-234103IPR004883Lateral organ boundaries, LOB
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MRMSCNGCRV LRKGCSENCS IRPCLAWIKS PDAQANATVF LAKFYGRAGL MNLINAGPDH  60
LRPAIFRSLL HEACGRIVNP IYGSVGLLWS GSWHLCQAAV EAVLKGEPIT PIATDAAADG  120
QGPPLKIYDI RHVSKDENSA SASADRKRPK TRRTRRSSAA KPVDPPEPKC VGGDEASHES  180
SLSHQSEVVA GGGGHDGGES KETESETTAE ATVTECGEIE LELTLGMEPV SRAYHVVPMK  240
KRRVGVFGTC QDDSTCKTEL VL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525159.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4159220.0DQ415922.1 Cleome spinosa clone BAC Cs1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525159.10.0PREDICTED: LOB domain-containing protein 41
SwissprotQ9M8861e-137LBD41_ARATH; LOB domain-containing protein 41
TrEMBLQ1KUM50.0Q1KUM5_9ROSI; Uncharacterized protein
STRINGXP_010525159.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM77212741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02550.11e-128LOB domain-containing protein 41