PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525138.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 381aa    MW: 42178.8 Da    PI: 4.9947
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525138.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.15.7e-061953437
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg.H 37
                    r+C+++ +   + +C+ ++ +lC +C    H   H
  XP_010525138.1 19 RICDTCRSAACTVYCRADSAYLCTSCDARVHAAnH 53
                    79******99******************9995563 PP
2zf-B_box30.76.3e-1061106342
        zf-B_box   3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42 
                      ++C+ +e+ ++ + C+ +   lC+ C  e+H+       H +vp+
  XP_010525138.1  61 VWVCESCERAPAAFLCKADAASLCAACDAEIHSAnplarrHHRVPI 106
                     689*****************************66899999877775 PP
3CCT70.34.7e-24312355144
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                     Rea++lRY+eK+ktRkFeK+irY+sRKa+Ae+RpR+KGrF+k++
  XP_010525138.1 312 REARVLRYREKKKTRKFEKTIRYASRKAYAETRPRIKGRFAKRT 355
                     9*****************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6651663IPR000315B-box-type zinc finger
SMARTSM003361.4E-81663IPR000315B-box-type zinc finger
CDDcd000212.28E-81963No hitNo description
PROSITE profilePS5011911.30559106IPR000315B-box-type zinc finger
PfamPF006438.6E-860106IPR000315B-box-type zinc finger
CDDcd000214.00E-962106No hitNo description
SMARTSM003361.1E-964106IPR000315B-box-type zinc finger
PROSITE profilePS5101716.648312354IPR010402CCT domain
PfamPF062037.4E-18312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009658Biological Processchloroplast organization
GO:0009909Biological Processregulation of flower development
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048576Biological Processpositive regulation of short-day photoperiodism, flowering
GO:0048579Biological Processnegative regulation of long-day photoperiodism, flowering
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MLKEERTSGG ETGENNWARI CDTCRSAACT VYCRADSAYL CTSCDARVHA ANHVASRHER  60
VWVCESCERA PAAFLCKADA ASLCAACDAE IHSANPLARR HHRVPILPIS GSMSGPMANH  120
HPSETAMTDT ENDMVVGREE AEDEDEDDEE AASWLLLNPG KNSGNNNNQN NGFFFDGEAD  180
EYLDLVEYNS SMENQFSDQY SQYHQDCGVP QKSFGGDGVV PLQVEESRGQ LHHEQQSFQL  240
AITYGSPGAL YGSYNGSMNH SVSMSSMDIV VVPESTASDM AVVSQLRAPK GTTDLLIGPP  300
IQMMPQLSPM DREARVLRYR EKKKTRKFEK TIRYASRKAY AETRPRIKGR FAKRTDIEAE  360
VDQAFSTTLM QESGYGIVPS F
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. Does not affect flowering time.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525138.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Expressed with a circadian rhythm showing a peak at dawn.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ4159220.0DQ415922.1 Cleome spinosa clone BAC Cs1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525138.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 2-like
SwissprotQ965021e-166COL2_ARATH; Zinc finger protein CONSTANS-LIKE 2
TrEMBLQ1KUP60.0Q1KUP6_9ROSI; Uncharacterized protein
STRINGXP_010525138.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21282670
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15840.11e-127B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Simon S,Rühl M,de Montaigu A,Wötzel S,Coupland G
    Evolution of CONSTANS Regulation and Function after Gene Duplication Produced a Photoperiodic Flowering Switch in the Brassicaceae.
    Mol. Biol. Evol., 2015. 32(9): p. 2284-301
    [PMID:25972346]