PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010525118.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | TCP | ||||||||
Protein Properties | Length: 193aa MW: 21631.2 Da PI: 7.5647 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 104.2 | 2.1e-32 | 50 | 127 | 2 | 78 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaess 78 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+d++sk+++WLl +ak +i++l+ ++ s+++++ ++++ XP_010525118.1 50 FGGKDRHSKVCTLRGLRDRRVRLSVPTAIQLYDLQDRLGVDQPSKAVDWLLHAAKDEIDALPPLPISPENFAlLNHHH 127 689*************************************************************99999888633332 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 6.8E-30 | 52 | 132 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 30.958 | 52 | 110 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSTATWKEEN GDVSAADGRT VITKGPPPAS SSWSWLRSKD PRIVRVSRAF GGKDRHSKVC 60 TLRGLRDRRV RLSVPTAIQL YDLQDRLGVD QPSKAVDWLL HAAKDEIDAL PPLPISPENF 120 ALLNHHHRPF LSLNPGLGPS QEPGQLGDEG RERGREKEDD EGGKNDAVLG TINCIDEREN 180 SVIERECRER RKW |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 7e-19 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
5zkt_B | 7e-19 | 57 | 111 | 1 | 55 | Putative transcription factor PCF6 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Plays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Binds to the 3'-ACC-5' repeats in the light-responsive promoter (LRP) of psbD, and activates its transcription. Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:11161017, ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010525118.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010525118.1 | 1e-139 | PREDICTED: transcription factor TCP13 | ||||
Swissprot | Q9S7W5 | 7e-66 | TCP13_ARATH; Transcription factor TCP13 | ||||
TrEMBL | R0HZ82 | 1e-64 | R0HZ82_9BRAS; Uncharacterized protein | ||||
STRING | XP_010525118.1 | 1e-139 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9134 | 26 | 37 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G02150.1 | 5e-65 | plastid transcription factor 1 |
Publications ? help Back to Top | |||
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