PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525095.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 369aa    MW: 41140.9 Da    PI: 7.1259
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525095.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding55.31.5e-172067148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd++l+  ++++G g+W++ +++ g+ R++k+c++rw +yl
   XP_010525095.1 20 KGPWTPEEDQKLLAFIEEHGHGSWRSLPEKAGLQRCGKSCRLRWTNYL 67
                     79********************************************97 PP

2Myb_DNA-binding54.33e-1773118148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E++ +++++++lG++ W++Ia +++ +Rt++++k++w+++l
   XP_010525095.1  73 RGKFTLQEEQTIIQLHALLGNR-WSAIATHLP-KRTDNEIKNYWNTHL 118
                      89********************.*********.************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.9E-251170IPR009057Homeodomain-like
PROSITE profilePS5129418.3111567IPR017930Myb domain
SuperFamilySSF466899.9E-3117114IPR009057Homeodomain-like
SMARTSM007172.7E-141969IPR001005SANT/Myb domain
PfamPF002492.0E-162067IPR001005SANT/Myb domain
CDDcd001679.76E-122267No hitNo description
PROSITE profilePS5129426.33368122IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.1E-2671123IPR009057Homeodomain-like
SMARTSM007175.8E-1772120IPR001005SANT/Myb domain
PfamPF002492.0E-1673118IPR001005SANT/Myb domain
CDDcd001676.84E-1275118No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010091Biological Processtrichome branching
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGSARNLRRS PCCDKVGLKK GPWTPEEDQK LLAFIEEHGH GSWRSLPEKA GLQRCGKSCR  60
LRWTNYLRPD IKRGKFTLQE EQTIIQLHAL LGNRWSAIAT HLPKRTDNEI KNYWNTHLKK  120
RLVKMGIDPV THKPKNETLL SSGGQSKNAA TLSHMAQWES ARLEAEARLA RESKLLHLQH  180
YQKSLNKTAH YAAFPHKSSS NWTKPNEGSA DQQHESPTST VTFTDNVPTA LMPSTGLGIL  240
PENKNNEDND LSGIPATTIE FVGSSSAASS DTGLIKEHEH EHDWITSTIH EFATAQMNCP  300
TEGIEEGFTS LLLSNTLDRN FSGAGKNDVV IGNESSCGGD YNYHEDNKNY WNSILNLVDS  360
SPSDSPPMF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-27181225108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525095.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525095.10.0PREDICTED: transcription factor MYB122
RefseqXP_010525097.10.0PREDICTED: transcription factor MYB122
SwissprotQ9LE631e-171MY106_ARATH; Transcription factor MYB106
TrEMBLD7LAI81e-178D7LAI8_ARALL; Uncharacterized protein
STRINGXP_010525095.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-157myb domain protein 106