PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525074.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB
Protein Properties Length: 310aa    MW: 34851.6 Da    PI: 6.4184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525074.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54.2e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT eEd++l++ +   G  +W+++++  g+ R++k+c++rw +yl
   XP_010525074.1 14 KGPWTVEEDKKLINFILTNGHCCWRAVPKLAGLLRCGKSCRLRWTNYL 61
                     79******************************99************97 PP
2Myb_DNA-binding46.96.3e-1571111547
                      -HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   5 TteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++ E++  +d++ qlG++ W++Ia+ ++ gRt++++k++w+++
   XP_010525074.1  71 SEYEEQVVIDLHVQLGNR-WSKIASQLP-GRTDNEIKNHWNTH 111
                      6779**************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.5E-20563IPR009057Homeodomain-like
PROSITE profilePS5129413.393961IPR017930Myb domain
SuperFamilySSF466894.12E-2611108IPR009057Homeodomain-like
SMARTSM007174.3E-121363IPR001005SANT/Myb domain
PfamPF002494.3E-141461IPR001005SANT/Myb domain
CDDcd001671.21E-81661No hitNo description
PROSITE profilePS5129425.12362116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.9E-2364116IPR009057Homeodomain-like
SMARTSM007174.6E-1266114IPR001005SANT/Myb domain
PfamPF002493.1E-1271111IPR001005SANT/Myb domain
CDDcd001677.30E-974112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MGRQPCCDKV GLKKGPWTVE EDKKLINFIL TNGHCCWRAV PKLAGLLRCG KSCRLRWTNY  60
LRPDLKRGLL SEYEEQVVID LHVQLGNRWS KIASQLPGRT DNEIKNHWNT HIKKKLRKMG  120
IDPVTHKPLS EEEASQPPKP QPGKKKPLKK PQEHRNGETQ EHQERESVRL LINHPDKERD  180
LDQMGIGQNA GICVDEVPLM NPDEILAMPP GCINSNSCGL SSSSSSSSSC ASSGDGTSKF  240
PEEMEFLDDF KWLLSDGDID KNKNAVDTMN FLWDNDLGDS LDFLLNDDFV GSECPKTVLD  300
TWAPLGSHLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-27121165108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as positive regulator of abscisic acid (ABA) signaling in response to salt stress. Acts as negative regulator ABI1, ABI2 and PP2CA, which are protein phosphatases 2C acting as negative regulator of ABA signaling. Binds to the DNA specific sequence and core element 5'-ACGT-3' found in the promoters of ABI1 and PP2CA to negatively regulate their expression during ABA-dependent salt stress response. {ECO:0000269|PubMed:23660402}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00513DAPTransfer from AT5G16600Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525074.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress, drought stress and abscisic acid (ABA). Down-regulated by salicylic acid (SA) methyl jasmonate (JA). {ECO:0000269|PubMed:23660402}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525072.10.0PREDICTED: myb-related protein 330-like
RefseqXP_010525074.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9C7U73e-87MYB20_ARATH; Transcription factor MYB20
TrEMBLV4N7M01e-109V4N7M0_EUTSA; Uncharacterized protein
STRINGXP_010525072.10.0(Tarenaya hassleriana)
STRINGXP_010525074.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2200124
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16600.11e-104myb domain protein 43
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]