PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010525050.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 316aa    MW: 34962.6 Da    PI: 9.3279
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010525050.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix45.32.2e-1425124186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..............rergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 
                     +W+++ + +Li+a   +  +l+rg+l++++W+ev++++              ++ +  r+ +qCk++++ l+k+yk ++++ ++ + ++ s +p+
  XP_010525050.1  25 CWSEDATFTLIDAWGGRYLDLNRGNLRQKHWQEVADAVndshfssgggvsgaSKPQPYRTDVQCKNRIDTLKKKYKTERARVSESNGGHISPWPF 119
                     7*************************************************976666689************************9999******** PP

        trihelix  82 fdqle 86 
                     f+ l+
  XP_010525050.1 120 FSALD 124
                     **998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138376.0E-2424126No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MDAVNGTPSP ASSRPASSVP ARDDCWSEDA TFTLIDAWGG RYLDLNRGNL RQKHWQEVAD  60
AVNDSHFSSG GGVSGASKPQ PYRTDVQCKN RIDTLKKKYK TERARVSESN GGHISPWPFF  120
SALDNLLREN FPATGTPDST ENNHRLTLPM SITPFPVAPR SAIPRRPSSA XPEVIEEPSS  180
YRGNLSAFAA AAAAAWPASD DDSEGSRSRS SGGGRKRGRE GERKEGYKEV ANAIERLGQI  240
YERVEEKKRR EMVELEKQRM RFAKELECHR MQLFTEMQVR LHDLKRAAGS KGSSSSVAAS  300
AALDFGLMDF PSYFSR
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010525050.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010525050.10.0PREDICTED: LOW QUALITY PROTEIN: trihelix transcription factor ASIL2
TrEMBLA0A384LCJ31e-144A0A384LCJ3_ARATH; Uncharacterized protein
TrEMBLQ8GXR61e-144Q8GXR6_ARATH; Sequence-specific DNA binding transcription factor
STRINGXP_010525050.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-111sequence-specific DNA binding transcription factors