PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010524910.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 240aa MW: 26519.4 Da PI: 6.6012 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 120.1 | 1.3e-37 | 10 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++eq +++fa++hk+FGasn +kll +lp+++r +a+ ++ yeA+ar++dP+yG+v++i++lqqq+ +l+++l XP_010524910.1 10 PCGACKFLRRKCVKGCVFAPYFCHEQgASHFAAIHKVFGASNASKLLCHLPTSDRCEAAITISYEAQARLQDPIYGCVSHIFALQQQVFNLQTQL 104 7*************************89******************************************************************* PP DUF260 95 allkee 100 a lk++ XP_010524910.1 105 AILKQQ 110 **9997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.875 | 9 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.1E-35 | 10 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 240 aa Download sequence Send to blast |
MAGGSGSGSP CGACKFLRRK CVKGCVFAPY FCHEQGASHF AAIHKVFGAS NASKLLCHLP 60 TSDRCEAAIT ISYEAQARLQ DPIYGCVSHI FALQQQVFNL QTQLAILKQQ AAQSMIDTLS 120 PSLENPNCYY ENSRPPSHLH QEHRDLHQTH QQIHQTANSN HQIDLSPTDN ITMSYIQQGI 180 VVGDLSSSNN NNMENYYNEN KSSGEAHTSI SSFGESSQQW MAFHDAEDLH SATFGHLLYS |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 2e-35 | 6 | 104 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 2e-35 | 6 | 104 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010524910.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524910.1 | 0.0 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 3e-78 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | R0FTQ3 | 2e-76 | R0FTQ3_9BRAS; Uncharacterized protein | ||||
STRING | XP_010524910.1 | 1e-180 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT3G58190.1 | 2e-79 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
---|---|---|---|
|