PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524902.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GeBP
Protein Properties Length: 429aa    MW: 46706 Da    PI: 4.684
Description GeBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524902.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF5731154.6e-36126223297
          DUF573   2 lfqrlwseeDeivlLqGlidf.kaktgkspsd.didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskk 94 
                     lfqrlw++eDei lL+G++ + ++++g+s++  d+  fye++k++++++++k+qlveK+rrLKkK+++ ++k++ gke+ f+++hdq +fe+s+k
  XP_010524902.1 126 LFQRLWTDEDEIELLRGFLVYmTSHRGSSSHPpDTAPFYEQIKSRLQLDFNKNQLVEKLRRLKKKYRNVMSKVSAGKEVFFKSPHDQATFEISRK 220
                     79***************999978999*999999************************************************************** PP

          DUF573  95 iWg 97 
                     iW+
  XP_010524902.1 221 IWN 223
                     **8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF045043.0E-33127223IPR007592Protein of unknown function DUF573
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MASEQGDAVL SLESPDLEED GGGGGGGGES DSDEDLREND DVMIPEENDA DDDDPEEEDL  60
NSPCTSSLAM VSAAAVVVSP TDAVTVALPA GSAVAVAAIP VDSDQKWHRM TEIVQQRPAL  120
DDSRRLFQRL WTDEDEIELL RGFLVYMTSH RGSSSHPPDT APFYEQIKSR LQLDFNKNQL  180
VEKLRRLKKK YRNVMSKVSA GKEVFFKSPH DQATFEISRK IWNHSGKIIG FEDNNVPDFE  240
ETNHHHHVNN NNGNSIINTP SGNLNTEIDS ENGVEKKAMM SNSSGSRKRS RSRIGKTEED  300
KPVTPCDGNV GNANENVGGG NLAGLIEETV RNCVSPVIKE MMNGTTAMMM ATMGGFPGGG  360
GGHGLGALSL SPILMQPLGL GLGGGGKSVV DERWRKQKIL ELEVYSRRLE LVQEQIRVAL  420
HELRTMPSG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1287292KRSRSR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524902.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524902.10.0PREDICTED: probable transcription factor At3g04930
SwissprotF4K5T40.0STKLU_ARATH; Probable transcription factor At5g28040
TrEMBLR0I2K60.0R0I2K6_9BRAS; Uncharacterized protein
STRINGXP_010524902.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30982764
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G04930.11e-125DNA-binding storekeeper protein-related transcriptional regulator
Publications ? help Back to Top
  1. García-Cano E,Hak H,Magori S,Lazarowitz SG,Citovsky V
    The Agrobacterium F-Box Protein Effector VirF Destabilizes the Arabidopsis GLABROUS1 Enhancer/Binding Protein-Like Transcription Factor VFP4, a Transcriptional Activator of Defense Response Genes.
    Mol. Plant Microbe Interact., 2018. 31(5): p. 576-586
    [PMID:29264953]