PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524631.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family CO-like
Protein Properties Length: 362aa    MW: 39550.7 Da    PI: 4.9745
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524631.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box19.12.7e-06444539
        zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39
                    +C+ ++e++   +C+++  +lC +C  + H+       H++
  XP_010524631.1  4 MCDFCGEQRSMVYCRSDAACLCLSCDRNVHSAnalskrHSR 44
                    6*****************************65677777765 PP
2zf-B_box24.94.2e-084690440
        zf-B_box  4 rkCpeHeekelqlfCedCqqllCedClleeHkg........Htvv 40
                     +C+++++++++  C++ ++ lC++C  + H g        H+++
  XP_010524631.1 46 LVCEKCNSQPASVRCTEERVSLCQNCDWSVHGGasnpssahHKRQ 90
                    68***************************9*55888888877765 PP
3CCT583.4e-20305347143
             CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                     R  a++RY eK+k+RkFeK++rY+sRKa+A+ R RvKGrF k+
  XP_010524631.1 305 RSDAVMRYMEKKKSRKFEKRVRYASRKARADVRRRVKGRFIKA 347
                     889*************************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.527147IPR000315B-box-type zinc finger
CDDcd000213.57E-7447No hitNo description
SMARTSM003363.7E-8447IPR000315B-box-type zinc finger
PROSITE profilePS501199.4144392IPR000315B-box-type zinc finger
CDDcd000215.70E-64778No hitNo description
SMARTSM003361.54892IPR000315B-box-type zinc finger
PROSITE profilePS5101714.882305347IPR010402CCT domain
PfamPF062032.6E-15305347IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 362 aa     Download sequence    Send to blast
MGYMCDFCGE QRSMVYCRSD AACLCLSCDR NVHSANALSK RHSRTLVCEK CNSQPASVRC  60
TEERVSLCQN CDWSVHGGAS NPSSAHHKRQ NVNCYSGCPS SEEFASIWSF VSDLSSAGQS  120
VCEEEMALMS ITDDGPRENS TTRDADADQG DGLPETSSAA HRMDPPRLPA SSRLAKGLGA  180
CDDDFYGDLI MDEVDLALEN YEELFGVAFN SPEDLFENGG LHNLFEKRDL PSAAPEGSSA  240
GLGNGTMLSA GSNAASADSF MSAKTDSIIC FTEENNVGDH QECEASSCVR LSAAQDIVSS  300
QAASRSDAVM RYMEKKKSRK FEKRVRYASR KARADVRRRV KGRFIKAGDT YDYDPLCQTR  360
SY
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524631.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524630.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
RefseqXP_010524631.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 10-like
SwissprotQ9LUA91e-159COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A178UQF11e-157A0A178UQF1_ARATH; BBX8
STRINGXP_010524630.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.11e-149B-box type zinc finger protein with CCT domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]