PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524464.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 590aa    MW: 65961.1 Da    PI: 9.8223
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524464.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.81e-124295248
                     SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT........TTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmg........kgRtlkqcksrwqkyl 48
                     ++W+t+E++ll++avk++G ++W+++a +++        +  t+ +ck+++++++
   XP_010524464.1 42 QSWSTWEELLLACAVKRHGFHDWDSVAMEVQsrsslprfL-TTAQNCKHKYRDLK 95
                     78*******************************9999975.49********9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466896.32E-73697IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.603.6E-63696IPR009057Homeodomain-like
PROSITE profilePS512949.7053699IPR017930Myb domain
SMARTSM007173.2E-84097IPR001005SANT/Myb domain
PfamPF002492.8E-124295IPR001005SANT/Myb domain
CDDcd001674.65E-84395No hitNo description
SMARTSM002974.5E-16278387IPR001487Bromodomain
SuperFamilySSF473704.71E-17285388IPR001487Bromodomain
CDDcd043692.73E-14292382No hitNo description
Gene3DG3DSA:1.20.920.101.4E-14293398IPR001487Bromodomain
PfamPF004392.0E-11296371IPR001487Bromodomain
PROSITE profilePS5001412.223297368IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 590 aa     Download sequence    Send to blast
MMNAAEATPN GMNDEDDNNI INYSCRDNHT GDDNIDQRKH SQSWSTWEEL LLACAVKRHG  60
FHDWDSVAME VQSRSSLPRF LTTAQNCKHK YRDLKRRFED DGVGDNETED GDDKADNIPW  120
LNQLRGLRVA ELRRDLQRYD VSILSLESKV KKLEEERDRS VGCQKPDLDD DSKGERSEND  180
VTEPARPNTV MAEEKESDRE NGSINESNST ASGGKLAGDG DETSRAREDS GNPDPDQVCK  240
AAAEDGSEVS HSGESGTSAG FGRTWKRSGK EGQGGGGEMR TVAGESEPLI LFLEMIRAHP  300
RGSLFERRLR IQGTEEYKRL VREHLDMETI QEKLEKGYYA SSIISFYRDL HLLFTNAIIF  360
FPNSSPESIA AHQLRTLVST KINQEFGKLT AKQDPETSDS SLTRQKPSDP LVPCKKRRLL  420
SAKPSSPSSS FILKEEKTSD QASADDKIVA SVRSSRRRTN KGVPALATST KTNKKQMGSK  480
TNSPTDKKQE TAKADKKKSV ADFLKRIKNS PANSPKKGGN RSKGQKKSSD NGKKDKDTKT  540
RQRELRSNNA GKKKVEEDNT PLKRSRGRQQ KKAAEVAESS GKQPKKRKRR
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1581587KQPKKRK
2583589PKKRKRR
3584589KKRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524464.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524464.10.0PREDICTED: uncharacterized protein LOC104802516
TrEMBLA0A1J3K5561e-168A0A1J3K556_NOCCA; Uncharacterized protein
STRINGXP_010524464.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM41231947
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44430.11e-145DNA-binding bromodomain-containing protein