PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524443.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Trihelix
Protein Properties Length: 383aa    MW: 41368.2 Da    PI: 10.0173
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524443.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix65.21.4e-2062152186
        trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm....rergf..erspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                     +W+++e+ aLi+a+ +++++l rg+lk+++W+ev++ +       g   +++++qC++k+e+l+kry+ + +++++   s+  s++++++++e
  XP_010524443.1  62 CWSHEETIALIDAYGDKWHALHRGSLKANHWQEVAETVaarcP--GAmpQKTAVQCRHKMEKLRKRYRTEIQRARSVpVSRFASSWVHYKRME 152
                     7***********************************9966423..333599*************************9779999*********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138373.7E-2161153No hitNo description
PROSITE profilePS500906.2663123IPR017877Myb-like domain
SMARTSM005951.7E-1070159IPR006578MADF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MSRSDSPSAQ DPNPNPSPGR SPPSSPQSLL PPPSSTTESA SAAAVTTAST AVKNPRRLPP  60
PCWSHEETIA LIDAYGDKWH ALHRGSLKAN HWQEVAETVA ARCPGAMPQK TAVQCRHKME  120
KLRKRYRTEI QRARSVPVSR FASSWVHYKR METMEKGPET KPDNGADSGD DDRDDGEDDY  180
PPRYPFSGDG YKNGGSAAKT TPGFFNRNGI AGSRGSGAGS SSVGSGGIRI RIPTGVSIAQ  240
PGPRFPGKID QKYTTNTNSG ATANVSANPK PGIGAGFNYG ARMARASEGG RAGAAMARRE  300
RETGDDPMGE IASAIKLLGD TLMRTEQSKM EMTREIEAMK MEMEMKRTEM ILESQQRIVE  360
SFAKALAEGK KTKKPRRIES DDS
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524443.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524443.10.0PREDICTED: trihelix transcription factor ASIL2
TrEMBLV4KMI11e-145V4KMI1_EUTSA; Uncharacterized protein
STRINGXP_010524443.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM89632534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.11e-98Trihelix family protein