PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524419.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 276aa    MW: 30093.9 Da    PI: 6.3659
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524419.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.4e-1782131255
             AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr ++ +g+Wv+eIr p++   + r++lg++ tae+Aa+a++ a+++++g
  XP_010524419.1  82 TYRGVRMRS-WGKWVSEIRQPRK---KSRIWLGTYRTAEMAARAHDVAALAIKG 131
                     69****998.**********843...6***********************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.2E-3682145IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-3182140IPR001471AP2/ERF domain
PfamPF008476.6E-1282131IPR001471AP2/ERF domain
PROSITE profilePS5103222.61682139IPR001471AP2/ERF domain
SuperFamilySSF541712.94E-2182139IPR016177DNA-binding domain
PRINTSPR003672.9E-108394IPR001471AP2/ERF domain
CDDcd000184.94E-3083139No hitNo description
PRINTSPR003672.9E-10105121IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 276 aa     Download sequence    Send to blast
MEKHINIERS ALQDNTFLVN TTSASSSSLS PSSSCSSTSF SLETCTVDNS KARASRKAPD  60
DNNGAKKRHK NNDNGSGDKH PTYRGVRMRS WGKWVSEIRQ PRKKSRIWLG TYRTAEMAAR  120
AHDVAALAIK GSTAYLNFPK LSGELPRPAT TSPKDIQAAA AKAAATWHDL TPTADDRTMG  180
SDDSGESETS RAEISAARSS SSLVSSDMMT RDSSVTSSAS SADKDSEEDT LFDLPDLFTD  240
GSTRNDAFCY SYSSTWQLCA ADSVFRLEEP FLWQND
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-1775139772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524419.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524419.10.0PREDICTED: ethylene-responsive transcription factor ERF034-like
SwissprotQ8LBQ73e-85ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLD7LBU11e-89D7LBU1_ARALL; Uncharacterized protein
STRINGXP_010524419.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM18528283
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-53ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]