PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010524403.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | SBP | ||||||||
Protein Properties | Length: 352aa MW: 37746.8 Da PI: 8.7333 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 137 | 5.6e-43 | 71 | 148 | 1 | 78 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 +CqvegC++dls++k y++rhkvC +hsk+p+v+v+gleqrfCqqCsrfh+l efD+ekrsCrrrLa+hnerrrk+q+ XP_010524403.1 71 RCQVEGCRVDLSNVKAYYSRHKVCAMHSKSPKVTVAGLEQRFCQQCSRFHQLPEFDQEKRSCRRRLAGHNERRRKPQP 148 6**************************************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 5.1E-35 | 64 | 133 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.18 | 69 | 146 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.15E-40 | 70 | 151 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.7E-32 | 72 | 145 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0048653 | Biological Process | anther development | ||||
GO:2000025 | Biological Process | regulation of leaf formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 352 aa Download sequence Send to blast |
METGSGSSPG PATESGGSST ESSLSSGLKF GQKIYFEDSG GDGRGPGPSS SSGPGRKTRG 60 GGSGQTGQPP RCQVEGCRVD LSNVKAYYSR HKVCAMHSKS PKVTVAGLEQ RFCQQCSRFH 120 QLPEFDQEKR SCRRRLAGHN ERRRKPQPPA LFTTRYGRIS PSLLGNATTA MSGGSFLADP 180 MASVMRRPLS SHPWQIDPET HPLNIFGGPT SFSCPEAMNP RAESYKGVAD SSCALSLLSN 240 QQQQQQPSPT WEASMDFNLM TVGGVSIAQP GPASTHHQYP SPPPWELKNI GSTSQDMPPV 300 LGLGRISEAT NSQMGGGSAA MSGFELSQNQ QTRRLYMEHE NTSGYDSSQN IN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 4e-30 | 61 | 145 | 1 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00307 | DAP | Transfer from AT2G42200 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010524403.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305|PubMed:12202040}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524403.1 | 0.0 | PREDICTED: squamosa promoter-binding-like protein 9 | ||||
Swissprot | Q700W2 | 1e-106 | SPL9_ARATH; Squamosa promoter-binding-like protein 9 | ||||
TrEMBL | E4MYE1 | 1e-113 | E4MYE1_EUTHA; mRNA, clone: RTFL01-50-J24 | ||||
TrEMBL | V4MJX0 | 1e-113 | V4MJX0_EUTSA; Uncharacterized protein | ||||
STRING | XP_010524403.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2144 | 27 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42200.1 | 4e-96 | squamosa promoter binding protein-like 9 |