PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524396.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRAS
Protein Properties Length: 611aa    MW: 66541.2 Da    PI: 5.423
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524396.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS2969.6e-912476082374
            GRAS   2 velLlecAeavss.gdlelaqalLarlsel.....aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 
                     +++L+++Ae + + gd+  aq +Larl+++     +++++ p+qR+a y+teAL + l++      ++     +s++n + ++aa+++fse+sP+
  XP_010524396.1 247 INQLFNAAELIGTgGDHVIAQGILARLNHHlnntiCNNNKPPFQRAALYLTEALYSLLVS------DSA---ISSPQNLILRIAAYRAFSETSPF 332
                     689********8868999**********9965544555666******************9......333...3344559**************** PP

            GRAS  91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.skeeleetgerLakfAeelgvpfefnvlvak 184
                     l+f ++taNqaIl+++eg +++HiiDfd++ G QW++L+q+L  R++ +p l+iT+++sp+++ ++ el+  +e L+ fAee+++p+++++l  +
  XP_010524396.1 333 LQFVNFTANQAILDSLEGFDQIHIIDFDVGFGSQWASLMQELVGRNRAAPPLKITAFASPSTFsDELELRFAEECLRTFAEEVEIPVKIELLCLD 427
                     *************************************************************9999**************************9888 PP

            GRAS 185 rledleleeLrvkp..gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpr 277
                      l d   + Lr+++  +Ea+aVnl ++       s++l+     +L++++++sP+vvv++++ +d+n+++F + +++al+yy++l++sl+a   +
  XP_010524396.1 428 LLLDPIHWPLRLRSseKEAIAVNLPISSVI----SGCLP----LILRFLRQISPNVVVCSDRGCDRNDAPFPNAVIHALQYYTSLLESLDAA-KP 513
                     77777788888877679*******994433....34555....5*********************************************988.67 PP

            GRAS 278 eseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee..sgslvlgWkdrpLvsv 370
                      s+ + ++Er +l+++ + ++ +++ +    +e++  Wr+ +++ GF++ ++s+ a++qa++l+++ +++g +ve++  s slvl+W++ +Lvsv
  XP_010524396.1 514 SSDVADSIERLWLQPSMQRLLVNRHHW----TERAPPWRSLFGQGGFTASSVSHAAEAQAECLVQRSPGRGIHVEKRlsSSSLVLCWQRTELVSV 604
                     889999********************9....99999***************************************8877999************* PP

            GRAS 371 SaWr 374
                     SaW+
  XP_010524396.1 605 SAWK 608
                     ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098539.309221586IPR005202Transcription factor GRAS
PfamPF035143.3E-88247608IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 611 aa     Download sequence    Send to blast
MPLPFEQFQG QGGLDFSSLC SDSSLKDKIW ATTQKIGGDF SHVVGSSSGF SEPTSALDGL  60
RSPSPLASSS TTVLSSSHGA TAAVSVADEK WGQIGLEHLD GDSPGHEQSI VRLIMGDVGD  120
PGFGFGALDP GFGFGSGSVI DGVYRGLPLQ AVFQEQPAES FGEKIQITNL EALINQSSAL  180
FSPLSNSPSS PMAKHLNFGP NWSQPDFHQN QRALPFSDPG YDTFHSRRQK PPPPPPKLVC  240
DSQSAVINQL FNAAELIGTG GDHVIAQGIL ARLNHHLNNT ICNNNKPPFQ RAALYLTEAL  300
YSLLVSDSAI SSPQNLILRI AAYRAFSETS PFLQFVNFTA NQAILDSLEG FDQIHIIDFD  360
VGFGSQWASL MQELVGRNRA APPLKITAFA SPSTFSDELE LRFAEECLRT FAEEVEIPVK  420
IELLCLDLLL DPIHWPLRLR SSEKEAIAVN LPISSVISGC LPLILRFLRQ ISPNVVVCSD  480
RGCDRNDAPF PNAVIHALQY YTSLLESLDA AKPSSDVADS IERLWLQPSM QRLLVNRHHW  540
TERAPPWRSL FGQGGFTASS VSHAAEAQAE CLVQRSPGRG IHVEKRLSSS SLVLCWQRTE  600
LVSVSAWKCQ M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A6e-2428860839375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524396.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524396.10.0PREDICTED: scarecrow-like protein 22
SwissprotQ9M0000.0SCL22_ARATH; Scarecrow-like protein 22
TrEMBLA0A1J3ETA40.0A0A1J3ETA4_NOCCA; Scarecrow-like protein 27
STRINGXP_010524396.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM134171828
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60630.11e-180GRAS family protein
Publications ? help Back to Top
  1. Gustafson AM, et al.
    ASRP: the Arabidopsis Small RNA Project Database.
    Nucleic Acids Res., 2005. 33(Database issue): p. D637-40
    [PMID:15608278]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Xue XY, et al.
    Interaction between two timing microRNAs controls trichome distribution in Arabidopsis.
    PLoS Genet., 2014. 10(4): p. e1004266
    [PMID:24699192]