PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010524267.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family bHLH
Protein Properties Length: 372aa    MW: 41298.9 Da    PI: 5.4133
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010524267.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-09203250455
                     HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  XP_010524267.1 203 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 250
                     8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.06E-15197268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.18E-9197254No hitNo description
Gene3DG3DSA:4.10.280.108.0E-15199267IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088814.684199249IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6203250IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.9E-8205255IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 372 aa     Download sequence    Send to blast
MDLNGGLGAR STVSGPCREV TGLESLNFSD EFRQLVTMPH ENGGSFTALL ELPSTQAMEL  60
LHFSDSSCPP TNVAGEIAPP LHPFGTLTFP SNTVLMERAA RFSVAATEQN GNVSVPSNSS  120
ANLDRVKAEP TETDSSQRLV SDPMVESESP SQNQTQNQNN RSGKRKEREK KVKSSTKKTK  180
SSEEADKLPY VHVRARRGQA TDSHSLAERA RREKINARMK LLQELVPGCD KIQGTALVLD  240
EIINHVQSLQ RQVELLSMRL AAVNPRIDFN LDSILATESG SLMDGSFSGG TTMVMAWPHA  300
MENGQSFHQQ QQQQWPFDAF QQQVWGREED NHVNVNVDVH EHEHEHDDFT VSENFMVGSS  360
TTLFQNQVKM EL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010524267.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010524267.10.0PREDICTED: transcription factor bHLH48-like
SwissprotQ3EAI11e-158BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y31e-166A0A178V8Y3_ARATH; Uncharacterized protein
STRINGXP_010524267.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.21e-141bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]