PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010524045.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 209aa MW: 23692.5 Da PI: 9.6913 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.9 | 0.00016 | 46 | 68 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C + F++ L H+++H XP_010524045.1 46 YACSFCRREFKSAQALGGHMNVH 68 89*******************99 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.41E-6 | 43 | 72 | No hit | No description |
PROSITE profile | PS50157 | 11.115 | 46 | 73 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 1.8E-5 | 46 | 69 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 48 | 68 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 209 aa Download sequence Send to blast |
MKRNHFSRDK IQEDDDDNDH HNYFMNSSSE RHHFYEGSIP WPPRNYACSF CRREFKSAQA 60 LGGHMNVHRR DRAKLRQLPS WIFGSSHLCI PNPNPNPSPS PNTCFSSSSS TPHEPYPTQK 120 AQASPVPTRF NISSPKHGDS RKKDKNKGAV PWTREFKNPI DACQAGSGKS TKDQKKKGAA 180 EVVGLELEMS LKDPKHQVLD LELRLGCLN |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1njq_A | 7e-12 | 41 | 68 | 2 | 29 | superman protein |
2l1o_A | 7e-12 | 41 | 68 | 2 | 29 | Transcriptional regulator SUPERMAN |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010524045.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524045.1 | 1e-156 | PREDICTED: transcriptional regulator SUPERMAN | ||||
STRING | XP_010524045.1 | 1e-156 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9575 | 24 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G42410.1 | 8e-44 | zinc finger protein 11 |