PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010524042.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | LBD | ||||||||
Protein Properties | Length: 243aa MW: 26831.4 Da PI: 6.4318 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.8 | 9.1e-39 | 9 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+k+Cv+apyf++eq ++fa++hk+FGasn +kll++lp+++r +a+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+++l XP_010524042.1 9 PCGACKFLRRKCVKGCVFAPYFCHEQgVSHFAAIHKVFGASNASKLLSHLPTSDRCEAAITISYEAQARLQDPVYGCVSHIFALQQQVVNLQTQL 103 7*************************77******************************************************************* PP DUF260 95 allkee 100 a lk++ XP_010524042.1 104 AILKQQ 109 **9997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.149 | 8 | 110 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-36 | 9 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010311 | Biological Process | lateral root formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MTGSGSGSPC GACKFLRRKC VKGCVFAPYF CHEQGVSHFA AIHKVFGASN ASKLLSHLPT 60 SDRCEAAITI SYEAQARLQD PVYGCVSHIF ALQQQVVNLQ TQLAILKQQA ARSMINTPSP 120 SSENPSCYYG NPRPPYHQEH QDLHQAHHLI HQTGNTNQFN LCPTDKNTLP YHQTGLVDAD 180 LSSSNNNNSM ANYYNENNST GEDHASFSSF GESSNYSDME QQWNAFQDAE DLQSAAFGYF 240 SYS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-36 | 2 | 103 | 4 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-36 | 2 | 103 | 4 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19. {ECO:0000269|PubMed:17259263}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010524042.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010524042.1 | 0.0 | PREDICTED: LOB domain-containing protein 29-like | ||||
Swissprot | Q9M2J7 | 5e-91 | LBD29_ARATH; LOB domain-containing protein 29 | ||||
TrEMBL | A0A178VM67 | 1e-88 | A0A178VM67_ARATH; LBD29 | ||||
STRING | XP_010524042.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-77 | lateral organ boundaries-domain 29 |
Publications ? help Back to Top | |||
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