PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523988.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family C3H
Protein Properties Length: 475aa    MW: 50857.3 Da    PI: 8.5904
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523988.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.15.1e-124975127
                    --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                    ++ + C +++rtG+C yG+rC+++H++
  XP_010523988.1 49 PGVPDCAYYMRTGICGYGSRCRYNHPR 75
                    5789*********************96 PP
2zf-CCCH40.44.8e-1396120327
                     S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                     +++C+f+++tGtCk+G++CkF+H++
  XP_010523988.1  96 EPPCQFYLKTGTCKFGASCKFHHPK 120
                     79*********************96 PP
3zf-CCCH36.39.7e-12141166227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++++C+++++tG+Ck+G +CkF+H++
  XP_010523988.1 141 GEKECSHYLKTGQCKFGVTCKFHHPQ 166
                     5789********************97 PP
4zf-CCCH38.42e-12295321127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C++++rtG Ck+G +CkF+H++
  XP_010523988.1 295 PGEPECQYYLRTGDCKFGLSCKFHHPR 321
                     5799*********************96 PP
5zf-CCCH35.31.9e-11342367227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     +  +C f++++G+C++G++CkF H++
  XP_010523988.1 342 GVQPCTFYLQNGFCRFGSTCKFDHPM 367
                     6789********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.9E-64875IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.0984876IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-95075IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.27E-65276IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-55475IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-693120IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.09893121IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-1096120IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-696121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-598119IPR000571Zinc finger, CCCH-type
SMARTSM003565.1E-5139166IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.483139167IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-9141166IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.03E-5142167IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.4E-4145165IPR000571Zinc finger, CCCH-type
SMARTSM003561.4E-5294321IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.887294322IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-10296321IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.16E-5298323IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.4E-5300322IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-6340367IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.347340368IPR000571Zinc finger, CCCH-type
PfamPF006425.0E-9342367IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-6342370IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5344365IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MDMYGRNQAT NGSQSGQAPE WSSGGNETGL EESMWRLGLS NSETYPERPG VPDCAYYMRT  60
GICGYGSRCR YNHPRDRAMV EAAVRATGDY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK  120
NAGGSMSQVP LNIHGYPLRE GEKECSHYLK TGQCKFGVTC KFHHPQPAGT TAPASAPQFY  180
PSVHSPIPDQ YGGPSSSLRV ARPPLLPGSY MQGAYGPMLL TPGVVPIPGW SPYSAPMSPV  240
LSPGAQHAVG ATSLYGVTQL SSSTPSVAGV YQSLSSSTAP SAAGNQKEQI FPERPGEPEC  300
QYYLRTGDCK FGLSCKFHHP RDRVPPRANC ILSPIGLPLR PGVQPCTFYL QNGFCRFGST  360
CKFDHPMGTL SYNPSASSLV DAPVAPSYPI GSLLGALAPS SSELRPELIS GSQKDAYLTG  420
LSSSRSTSSI SAGLIFSQSG SLPFPDMQLP SQTTALPLSS GSRITRQGRE IRRSF
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523988.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523985.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_010523986.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_010523988.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_010523989.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
RefseqXP_019056718.10.0PREDICTED: zinc finger CCCH domain-containing protein 32-like
SwissprotQ84W910.0C3H32_ARATH; Zinc finger CCCH domain-containing protein 32
TrEMBLR0HC920.0R0HC92_9BRAS; Uncharacterized protein
TrEMBLV4LAM60.0V4LAM6_EUTSA; Uncharacterized protein
STRINGXP_010523985.10.0(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47850.30.0C3H family protein