PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523959.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 286aa    MW: 31423.8 Da    PI: 5.4427
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523959.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15.2e-1977125355
             AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                     y+G+r+++ +g+W+AeIrdp++     r++lg+f taeeAa+a+++ + k++g
  XP_010523959.1  77 YRGIRQRP-WGKWAAEIRDPRK---GVRVWLGTFNTAEEAARAYDREAIKIRG 125
                     9*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5103224.05276133IPR001471AP2/ERF domain
SuperFamilySSF541711.44E-2276134IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.4E-3276134IPR001471AP2/ERF domain
SMARTSM003809.3E-4076139IPR001471AP2/ERF domain
CDDcd000182.61E-3377134No hitNo description
PfamPF008472.9E-1277125IPR001471AP2/ERF domain
PRINTSPR003677.1E-127788IPR001471AP2/ERF domain
PRINTSPR003677.1E-1299115IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 286 aa     Download sequence    Send to blast
MCGGAIISDF IIRNRGRSVS AADLWPHSSF SKIVGEFESD LSRLGRGGSV SIKRNQPVSG  60
EVEEAVKKPK RQRKNLYRGI RQRPWGKWAA EIRDPRKGVR VWLGTFNTAE EAARAYDREA  120
IKIRGKKAKV NFPNEDTHLS APTVNHLRND TISHLSYLNS PVADSSSTSF GFGDGLNPIP  180
DGCNTNQDHS AMHSDSVVEE NSEANSASYS PPAVNGCVTE AKEGEDEENE VLRLSEELMA  240
YEDYMRFYQI PYLDGQSSTA IDAGAQVSVV GNLWNFEDAV AASPIA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-2277133360ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16772KPKRQR
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523959.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523959.10.0PREDICTED: ethylene-responsive transcription factor ERF071-like
SwissprotO222593e-42ERF71_ARATH; Ethylene-responsive transcription factor ERF071
TrEMBLA0A067K8U52e-90A0A067K8U5_JATCU; Uncharacterized protein
STRINGXP_010523959.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G47520.14e-36ERF family protein
Publications ? help Back to Top
  1. Gasch P, et al.
    Redundant ERF-VII Transcription Factors Bind to an Evolutionarily Conserved cis-Motif to Regulate Hypoxia-Responsive Gene Expression in Arabidopsis.
    Plant Cell, 2016. 28(1): p. 160-80
    [PMID:26668304]
  2. Yao Y,Chen X,Wu AM
    ERF-VII members exhibit synergistic and separate roles in Arabidopsis.
    Plant Signal Behav, 2017. 12(6): p. e1329073
    [PMID:28537474]
  3. Eysholdt-Derzsó E,Sauter M
    Root Bending Is Antagonistically Affected by Hypoxia and ERF-Mediated Transcription via Auxin Signaling.
    Plant Physiol., 2017. 175(1): p. 412-423
    [PMID:28698356]
  4. Eysholdt-Derzsó E,Sauter M
    Hypoxia and the group VII ethylene response transcription factor HRE2 promote adventitious root elongation in Arabidopsis.
    Plant Biol (Stuttg), 2019. 21 Suppl 1: p. 103-108
    [PMID:29996004]