PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523904.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

MYB_related

Protein Properties

Length: 459aa MW: 51807.1 Da PI: 9.7218

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523904.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25	4.5e-08	132	173	3	45
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 WT+eE ++l d+++++ + + Ia ++++ Rt +++k+r++ XP_010523904.1 132 VWTKEETDQLFDLCERFDLR-FIVIADRFPLSRTVEELKDRYY 173 6*****************.*******************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF16282	3.5E-29	105	174	IPR032563	DAMP1, SANT/Myb-like domain
SuperFamily	SSF46689	7.58E-6	129	174	IPR009057	Homeodomain-like
SMART	SM00717	1.3E-4	129	178	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	1.8E-5	132	174	IPR009057	Homeodomain-like
CDD	cd11658	7.89E-19	133	174	No hit	No description
Pfam	PF05499	1.5E-7	336	400	IPR008468	DNA methyltransferase 1-associated 1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0000812	Cellular Component	Swr1 complex
GO:0035267	Cellular Component	NuA4 histone acetyltransferase complex
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 459 aa Download sequence Send to blast
MGGTDAKDIL GLPKTPLSIT QEKKPRPQKE SHRKPDGISR EVYALTGGIP PLMPSIDVSQ 60 LKRRPPADEK VVWRWLPFTN SARKDNLQLY HWVRVVNDVP PTGDYSFAKY NKSVDIMKYT 120 DEEYEKYLTD PVWTKEETDQ LFDLCERFDL RFIVIADRFP LSRTVEELKD RYYSGSGIRL 180 IMAVLSFVVT RALLRVRAQS PADVANHPLI KEQYDITRDR DRKRALSVVL SQTRQQEKKD 240 TEILAEAKRI TEARLAAWST EEPDVPVNAT AGPEKADGVV VPGDSVSPSA NVPPPTSGAA 300 PSTLVMPDNA STIASLRMLR VYLRTYALEQ MVQAASSSVG LRTIKRVEQT LQDLGVNLKP 360 KVPTKTVCDE HLELRKEILT LLNLQKQLQY KEAEGSSYRE GSYAEMPEPP QDRVFAQEPF 420 SFGAERPTKK DQKRKGPGRQ ANTPSPAHKR PRKMKASDL

Sequence ? help Back to Top

Protein Sequence Length: 459 aa Download sequence Send to blast

MGGTDAKDIL GLPKTPLSIT QEKKPRPQKE SHRKPDGISR EVYALTGGIP PLMPSIDVSQ  60
LKRRPPADEK VVWRWLPFTN SARKDNLQLY HWVRVVNDVP PTGDYSFAKY NKSVDIMKYT  120
DEEYEKYLTD PVWTKEETDQ LFDLCERFDL RFIVIADRFP LSRTVEELKD RYYSGSGIRL  180
IMAVLSFVVT RALLRVRAQS PADVANHPLI KEQYDITRDR DRKRALSVVL SQTRQQEKKD  240
TEILAEAKRI TEARLAAWST EEPDVPVNAT AGPEKADGVV VPGDSVSPSA NVPPPTSGAA  300
PSTLVMPDNA STIASLRMLR VYLRTYALEQ MVQAASSSVG LRTIKRVEQT LQDLGVNLKP  360
KVPTKTVCDE HLELRKEILT LLNLQKQLQY KEAEGSSYRE GSYAEMPEPP QDRVFAQEPF  420
SFGAERPTKK DQKRKGPGRQ ANTPSPAHKR PRKMKASDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3hm5_A	7e-20	104	174	4	78	DNA methyltransferase 1-associated protein 1
4iej_A	7e-20	104	174	4	78	DNA methyltransferase 1-associated protein 1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the SWR1 complex which mediates the ATP-dependent exchange of histone H2A for the H2A variant HZT1 leading to transcriptional regulation of selected genes by chromatin remodeling. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of selected genes principally by acetylation of nucleosomal histone H4 and H2A. {ECO:0000305\|Ref.5}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523904.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523904.1	0.0	PREDICTED: SWR1-complex protein 4 isoform X1
Swissprot	Q8VZL6	0.0	SWC4_ARATH; SWR1-complex protein 4
TrEMBL	D7LG02	0.0	D7LG02_ARALL; Myb family transcription factor
STRING	XP_010523904.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM8543	24	35

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47210.1	0.0	MYB_related family protein

Publications ? help Back to Top
Gómez-Zambrano Á, et al. Arabidopsis SWC4 Binds DNA and Recruits the SWR1 Complex to Modulate Histone H2A.Z Deposition at Key Regulatory Genes. Mol Plant, 2018. 11(6): p. 815-832 [PMID:29604400]