PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523903.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | MYB | ||||||||
Protein Properties | Length: 262aa MW: 30008 Da PI: 4.7059 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 59.6 | 7e-19 | 21 | 68 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+eEd +l++ v +G g+W+ Iar g++Rt+k+c++rw++yl XP_010523903.1 21 KGPWTEEEDAILLNHVSVHGEGRWNNIARSSGLKRTGKSCRLRWLNYL 68 79********************************************97 PP | |||||||
2 | Myb_DNA-binding | 48.7 | 1.7e-15 | 74 | 117 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 rg+ T eE+ l+++++ ++G++ W++Ia++++ gRt++++k++w++ XP_010523903.1 74 RGNITLEEQFLILKLHSLWGNR-WSKIAQYLP-GRTDNEIKNYWRT 117 7999******************.*********.***********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-23 | 15 | 71 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 27.016 | 16 | 72 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.31E-31 | 18 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.5E-17 | 20 | 70 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.1E-16 | 21 | 68 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.66E-13 | 23 | 68 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.8E-22 | 72 | 122 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.636 | 73 | 123 | IPR017930 | Myb domain |
SMART | SM00717 | 5.7E-14 | 73 | 121 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 4.4E-14 | 74 | 117 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 6.29E-11 | 78 | 117 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MDEYEQNSMF PTNDEDSDVR KGPWTEEEDA ILLNHVSVHG EGRWNNIARS SGLKRTGKSC 60 RLRWLNYLRP DVRRGNITLE EQFLILKLHS LWGNRWSKIA QYLPGRTDNE IKNYWRTRVQ 120 KQAKHLNCEV NSNLFKETMR NIWMPRLLER IHAQSSASTC QTGESALTEP GQLDFAPTGP 180 VLDQFVDPNQ QFTASNSPET QISTFSDQGQ ANGSGYCPIQ SGFDGFDDWS SGGDGMETLL 240 NDVDSYWNIQ DQFCSETSYS YN |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1h8a_C | 3e-26 | 16 | 123 | 22 | 128 | MYB TRANSFORMING PROTEIN |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in the jasmonate-dependent defense responses to the rice blast fungus Magnaporthe oryzae. Does not seem to function in the salicylic acid-dependent signaling pathway. {ECO:0000269|PubMed:11310740}. | |||||
UniProt | Transcription factor involved in abiotic stress responses. Plays a regulatory role in tolerance to salt, cold, and drought stresses. Regulates positively the expression of genes involved in proline synthesis and transport, and genes involved in reactive oxygen species (ROS) scavenging such as peroxidase, superoxide dismutase and catalase during salt stress. Transactivates stress-related genes, including LEA3, RAB16A and DREB2A during salt stress. {ECO:0000269|PubMed:22301384}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523903.1 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by jasmonate (JA), wounding and infection by the fungal pathogen Magnaporthe oryzae. {ECO:0000269|PubMed:11310740}. | |||||
UniProt | INDUCTION: Induced by salt, cold and osmotic stresses, and abscisic acid (ABA). Down-regulated by salicylic acid (SA). {ECO:0000269|PubMed:22301384}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523903.1 | 0.0 | PREDICTED: transcription factor MYB108-like | ||||
Swissprot | Q10MB4 | 4e-75 | MYB2_ORYSJ; Transcription factor MYB2 | ||||
Swissprot | Q2QZJ8 | 2e-75 | JAMYB_ORYSJ; Transcription factor JAMYB | ||||
TrEMBL | D7LG00 | 1e-123 | D7LG00_ARALL; MYB transcription factor Atmyb2 | ||||
STRING | XP_010523903.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47190.1 | 1e-117 | myb domain protein 2 |