PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523853.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family B3
Protein Properties Length: 330aa    MW: 36895.4 Da    PI: 9.5839
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523853.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3100.69.3e-3233131193
                     EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 
                     f+kv tpsdv+k++rlv+pk++ae++    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+  +
  XP_010523853.1  33 FDKVVTPSDVGKLNRLVIPKQYAERYfpldSSSNEKGLLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGEiGR 127
                     89****************************66677899*************************************************54355555 PP

                     E..E CS
              B3  90 felv 93 
                      +l+
  XP_010523853.1 128 NSLF 131
                     5555 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.0E-4124124IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019366.15E-3030121IPR015300DNA-binding pseudobarrel domain
CDDcd100171.70E-2731132No hitNo description
PROSITE profilePS5086315.10133138IPR003340B3 DNA binding domain
PfamPF023626.3E-2933136IPR003340B3 DNA binding domain
SMARTSM010197.4E-2333129IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MMNLSAAKIH EEEEAKGVQP GGSSSNIEKE HMFDKVVTPS DVGKLNRLVI PKQYAERYFP  60
LDSSSNEKGL LLNFEDRTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR  120
GVGEIGRNSL FIDWGRRPKV PDPTSIAHFA GTMFPRFYAF PQPVVTIPRN YGNFQSFNRE  180
SYNLSYQHRH HYQFPRDLGY GYGNSMGGYY VRSLERNPVA VAEEAIVIES VPVVHRRAQP  240
VVAAAGKRLR LFGVDMDCGS TNSCTDQEES LSSGGNMPRG AVGTATSSSL QPRLASSGKS  300
SMVEAADDHR FSKKGKSLSI CIGENHNIHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-68281403116B3 domain-containing transcription factor NGA1
5os9_B1e-68281403116B3 domain-containing transcription factor NGA1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtRegulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523853.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523853.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
RefseqXP_010523854.10.0PREDICTED: B3 domain-containing transcription factor NGA1-like
SwissprotO827991e-105NGA1_ARATH; B3 domain-containing transcription factor NGA1
TrEMBLA0A1J3IYX31e-107A0A1J3IYX3_NOCCA; B3 domain-containing transcription factor NGA1
STRINGXP_010523853.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM13072899
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-102B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Lee BH, et al.
    The Arabidopsis thaliana NGATHA transcription factors negatively regulate cell proliferation of lateral organs.
    Plant Mol. Biol., 2015. 89(4-5): p. 529-38
    [PMID:26433582]
  3. Lozano-Sotomayor P, et al.
    Altered expression of the bZIP transcription factor DRINK ME affects growth and reproductive development in Arabidopsis thaliana.
    Plant J., 2016. 88(3): p. 437-451
    [PMID:27402171]
  4. Alvarez JP,Furumizu C,Efroni I,Eshed Y,Bowman JL
    Active suppression of a leaf meristem orchestrates determinate leaf growth.
    Elife, 2017.
    [PMID:27710768]
  5. Sasnauskas G,Manakova E,Lapėnas K,Kauneckaitė K,Siksnys V
    DNA recognition by Arabidopsis transcription factors ABI3 and NGA1.
    FEBS J., 2018. 285(21): p. 4041-4059
    [PMID:30183137]
  6. Sato H, et al.
    Arabidopsis thaliana NGATHA1 transcription factor induces ABA biosynthesis by activating NCED3 gene during dehydration stress.
    Proc. Natl. Acad. Sci. U.S.A., 2018. 115(47): p. E11178-E11187
    [PMID:30397148]