PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523853.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | B3 | ||||||||
Protein Properties | Length: 330aa MW: 36895.4 Da PI: 9.5839 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 100.6 | 9.3e-32 | 33 | 131 | 1 | 93 |
EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.se 89 f+kv tpsdv+k++rlv+pk++ae++ ++++e++ l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++ g+ + XP_010523853.1 33 FDKVVTPSDVGKLNRLVIPKQYAERYfpldSSSNEKGLLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKDKKLDAGDIVSFQRGvGEiGR 127 89****************************66677899*************************************************54355555 PP E..E CS B3 90 felv 93 +l+ XP_010523853.1 128 NSLF 131 5555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.0E-41 | 24 | 124 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 6.15E-30 | 30 | 121 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.70E-27 | 31 | 132 | No hit | No description |
PROSITE profile | PS50863 | 15.101 | 33 | 138 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 6.3E-29 | 33 | 136 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 7.4E-23 | 33 | 129 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009908 | Biological Process | flower development | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MMNLSAAKIH EEEEAKGVQP GGSSSNIEKE HMFDKVVTPS DVGKLNRLVI PKQYAERYFP 60 LDSSSNEKGL LLNFEDRTGK SWRFRYSYWN SSQSYVMTKG WSRFVKDKKL DAGDIVSFQR 120 GVGEIGRNSL FIDWGRRPKV PDPTSIAHFA GTMFPRFYAF PQPVVTIPRN YGNFQSFNRE 180 SYNLSYQHRH HYQFPRDLGY GYGNSMGGYY VRSLERNPVA VAEEAIVIES VPVVHRRAQP 240 VVAAAGKRLR LFGVDMDCGS TNSCTDQEES LSSGGNMPRG AVGTATSSSL QPRLASSGKS 300 SMVEAADDHR FSKKGKSLSI CIGENHNIHI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-68 | 28 | 140 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-68 | 28 | 140 | 3 | 116 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Regulates lateral organ growth. Functionally redundant with NGA2, NGA3 and NGA4. {ECO:0000269|PubMed:16603651}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523853.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523853.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Refseq | XP_010523854.1 | 0.0 | PREDICTED: B3 domain-containing transcription factor NGA1-like | ||||
Swissprot | O82799 | 1e-105 | NGA1_ARATH; B3 domain-containing transcription factor NGA1 | ||||
TrEMBL | A0A1J3IYX3 | 1e-107 | A0A1J3IYX3_NOCCA; B3 domain-containing transcription factor NGA1 | ||||
STRING | XP_010523853.1 | 0.0 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1307 | 28 | 99 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G46870.1 | 1e-102 | B3 family protein |