PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523822.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 364aa    MW: 39232.3 Da    PI: 8.8333
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523822.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof122.11.9e-3873134263
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63 
                     ++++l+cprC+stntkfCyynnysl+qPryfC++CrryWt+GG+lrnvPvGg++rknk+sss
  XP_010523822.1  73 PQEKLNCPRCNSTNTKFCYYNNYSLTQPRYFCRGCRRYWTEGGSLRNVPVGGSSRKNKRSSS 134
                     6899******************************************************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2472122IPR003851Zinc finger, Dof-type
PfamPF027017.5E-3375131IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.82677131IPR003851Zinc finger, Dof-type
PROSITE patternPS01361079115IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 364 aa     Download sequence    Send to blast
MDATKWTQGF QEMINVKPME HIIHNNIAQP TCTTGTSTVL VNSIANTGPG GCGGNANANA  60
AAATTAAEKK ARPQEKLNCP RCNSTNTKFC YYNNYSLTQP RYFCRGCRRY WTEGGSLRNV  120
PVGGSSRKNK RSSSAIFPTS STSATSALSS SSSLGMTTKL PDLNPPVLFS GQNPKSTSTQ  180
QQKGSSQDLN LLSFPVMQDG HHHQNMSQFL QMPKIENSIT QPNPNGSLSS LYVSSSPVSA  240
LEFLRTGVSS RGFNTFIPGP MIDSNTVLYS SSGFPTIADY KPSNLSFAGN IGHNNNNGNT  300
RSHETNEDIN GSGRVLFPFS EMKELSSTTT QEVGDNDDHQ QKSQVNSSAN AYWSGMFSAT  360
GPSW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the activation of a component that would trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523822.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523822.10.0PREDICTED: dof zinc finger protein DOF2.5-like isoform X1
SwissprotQ9ZPY01e-119DOF25_ARATH; Dof zinc finger protein DOF2.5
TrEMBLR0HPY21e-135R0HPY2_9BRAS; Uncharacterized protein
STRINGXP_010523822.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25282673
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46590.21e-107Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]