PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523815.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 618aa    MW: 68976 Da    PI: 6.6337
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523815.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.13.4e-23130230198
                     EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 
                     f+k+lt sd++++g +++ +k+a+e+       +   + +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv  ++L +gD +vF   + +
  XP_010523815.1 130 FVKILTASDTSTHGGFSVLRKHATEClpaldmtQ--ATPTQELVARDLHGVEWRFKHIFRGQPRRHLLTTGWSTFVTTKRLVTGDAFVFL--RGE 220
                     89****************************9543..445569************************************************..348 PP

                     EE..EEEEE- CS
              B3  89 efelvvkvfr 98 
                     ++ l+v+v+r
  XP_010523815.1 221 NGDLRVGVRR 230
                     8889***998 PP
2Auxin_resp1011.6e-33256335183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha++t++ F v+Y+Pr   s+F++ v+k+++a+k+ +svGmRf+m+fe+e+s+er ++Gt+vg+ dl+p +Wp SkWrsL+
  XP_010523815.1 256 ASHAVNTRTLFVVFYKPRI--SQFIIGVNKYMEAVKHGFSVGMRFRMRFEGEESPERIFTGTIVGIGDLSP-QWPASKWRSLQ 335
                     689***************8..9*************************************************.*********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.22E-40119259IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.0E-39123245IPR015300DNA-binding pseudobarrel domain
CDDcd100174.40E-20128230No hitNo description
SMARTSM010191.6E-21130232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.012130232IPR003340B3 DNA binding domain
PfamPF023623.5E-21130230IPR003340B3 DNA binding domain
PfamPF065078.4E-31256335IPR010525Auxin response factor
PfamPF023095.8E-14492591IPR033389AUX/IAA domain
SuperFamilySSF542771.42E-13500582No hitNo description
PROSITE profilePS5174528.066506598IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 618 aa     Download sequence    Send to blast
MANVDVDFKG SPMSDRRSGF DHDDMYTELW KACAGPLVEV PRVGERVFYF PQGHMEQLEA  60
STNQGLEEHI PLFNLPTKIL CQVLGVTLKA EHETDEVYAQ ITLRPEDDQS EPTSPDPPIS  120
ELPKQAVHSF VKILTASDTS THGGFSVLRK HATECLPALD MTQATPTQEL VARDLHGVEW  180
RFKHIFRGQP RRHLLTTGWS TFVTTKRLVT GDAFVFLRGE NGDLRVGVRR LARQQSTMPS  240
SVISSQSMHL GVLATASHAV NTRTLFVVFY KPRISQFIIG VNKYMEAVKH GFSVGMRFRM  300
RFEGEESPER IFTGTIVGIG DLSPQWPASK WRSLQTQWDE PASVQRPGKV SPWEIEPFLP  360
SSPMATPAQP QLKCKRSRPV DSPISVTDIT ASSASLKLFQ DSSAERNSNK TVFSGGYSST  420
LLLGPTNISF MSEQAERSQK PETPTSCYRL FGFDLTSNCK PSPTDKEPNG QDSNPSSLVK  480
EQKQDPPGTS HSQGKQQAPA NASSTRSRTK VQMQGMAVGR AVDLTVLRSY EELIEELEKM  540
FEIEGEIRAR DKWAVVFTDD EGDMMLVGDD PWNEFCKMAK KICIYSSEEV KKMSAKRKWS  600
LEGEGTVISL DSDQRPSS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-170143588355Auxin response factor 1
4ldw_A1e-170143588355Auxin response factor 1
4ldw_B1e-170143588355Auxin response factor 1
4ldx_A1e-170143588355Auxin response factor 1
4ldx_B1e-170143588355Auxin response factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523815.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523815.10.0PREDICTED: auxin response factor 18-like isoform X1
SwissprotQ9C5W90.0ARFR_ARATH; Auxin response factor 18
TrEMBLV4LHN40.0V4LHN4_EUTSA; Auxin response factor
STRINGXP_010523815.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM74351841
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61830.10.0auxin response factor 18
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]