PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523715.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

TCP

Protein Properties

Length: 357aa MW: 37354.1 Da PI: 10.3111

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523715.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	119	5.9e-37	71	163	2	95
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssgkaaksaa 95 ++k+ +++++hTkv+gR+RR+R++a+caar+F+L++eLG+++d++ti WLl+ a+pai+++tgt++ +a ++ +++ + + ++ ++ ++ ++ XP_010523715.1 71 PPKRASTKDRHTKVEGRGRRIRMPATCAARIFQLTRELGHKSDGETIRWLLEHAEPAIIAATGTGTVPAIAMsVNGALKIPTTTNANP--EPGEN 163 789*************************************************************999995553222222222222222..22222 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	6.3E-30	76	151	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	27.141	77	131	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 357 aa Download sequence Send to blast
MTTTQKLEIG EDDDMSTVDL SINGVGTSET SKTRVVDLTR LTPKEEPDQV GSVKPPPSST 60 VQVPSTSMAP PPKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL 120 LEHAEPAIIA ATGTGTVPAI AMSVNGALKI PTTTNANPEP GENPAKKRRK RPSNSEYIDI 180 NDAVSVPSGL APITTTQHPP LPSAASPVPV APAALQVLPQ GVXIPSNAVF LVPHVANAAG 240 PSNQPQVLAF PATATPLINI SARPMTSSFV GAMQQAAAMA APLQAVQSSS MLSVSTVAAS 300 KPSRTTSVMA SSSSSSSGIT TGSTASGSST RTHMLRDFSL EIYDKQELQL MARSSKH

Sequence ? help Back to Top

Protein Sequence Length: 357 aa Download sequence Send to blast

MTTTQKLEIG EDDDMSTVDL SINGVGTSET SKTRVVDLTR LTPKEEPDQV GSVKPPPSST  60
VQVPSTSMAP PPKRASTKDR HTKVEGRGRR IRMPATCAAR IFQLTRELGH KSDGETIRWL  120
LEHAEPAIIA ATGTGTVPAI AMSVNGALKI PTTTNANPEP GENPAKKRRK RPSNSEYIDI  180
NDAVSVPSGL APITTTQHPP LPSAASPVPV APAALQVLPQ GVXIPSNAVF LVPHVANAAG  240
PSNQPQVLAF PATATPLINI SARPMTSSFV GAMQQAAAMA APLQAVQSSS MLSVSTVAAS  300
KPSRTTSVMA SSSSSSSGIT TGSTASGSST RTHMLRDFSL EIYDKQELQL MARSSKH

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	165	169	KKRRK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523715.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523715.1	0.0	PREDICTED: LOW QUALITY PROTEIN: transcription factor TCP9-like
Swissprot	O64647	1e-110	TCP9_ARATH; Transcription factor TCP9
TrEMBL	V4KMR6	1e-126	V4KMR6_EUTSA; Uncharacterized protein
STRING	XP_010523715.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9831	24	34

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45680.1	5e-93	TCP family protein