PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523694.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family GRF
Protein Properties Length: 502aa    MW: 55576.3 Da    PI: 8.6088
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523694.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC73.42.5e-23100144145
             WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 
                     d+ep rCrRtDGKkWRC ++vl+ +k+C+rH+hrgr+rsrk +e+
  XP_010523694.1 100 DPEPTRCRRTDGKKWRCGNDVLPFQKYCQRHMHRGRKRSRKLVES 144
                     79***************************************9986 PP
2WRC62.37.2e-20374411239
             WRC   2 aepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrs 39 
                     +epgrCrRtDGKkWRCs+++l+ +k+C +H+hrg +++
  XP_010523694.1 374 NEPGRCRRTDGKKWRCSKEALPFQKYCPKHMHRGVKKR 411
                     79********************************8875 PP
3QLQ47.27e-173569337
             QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37
                    +T aQlq++ +Q++Ay+y++a+ P+Pp+Ll++i++
  XP_010523694.1 35 MTEAQLQEFQMQAMAYRYISAGHPLPPHLLVPIWN 69
                    8*********************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.6E-93369IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166618.8623469IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088802.7E-113568IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166723.99100144IPR014977WRC domain
PfamPF088792.3E-19101143IPR014977WRC domain
PROSITE profilePS5166720.814373420IPR014977WRC domain
PfamPF088791.7E-16375411IPR014977WRC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 502 aa     Download sequence    Send to blast
METQSPRSNC AEAKPEKSGA AGEERKSPPW KRETMTEAQL QEFQMQAMAY RYISAGHPLP  60
PHLLVPIWNS LALSWSRHLS MVHHLHRLSY QEFYQREMVD PEPTRCRRTD GKKWRCGNDV  120
LPFQKYCQRH MHRGRKRSRK LVESSEIASS DPKASMEDGS DSFSCHQTMA SSSSSKAPVV  180
TIASYADEDK SSTIQDSVSL SSFVSLASTN KSVTIECNGS GRNVDLNDND KSNRFMSDDF  240
IMKKQKDMIY RHGRLPSVQS EPKDKPGRYP EITGKQCRSS EDGLFIGKYL REHLQSGTEV  300
SGPPLEAADF IDSSKKDIST RNRLTGCNYS AKSSGMNVTG CMVPGIHFSP DSVLQGSLLF  360
GHGGFPLNRA ETENEPGRCR RTDGKKWRCS KEALPFQKYC PKHMHRGVKK RPGDTKAVAN  420
TGVSVSYSMA VTAAGSASCK DKDDHNAKLN TELSVSVLAN PLVGRGCEEK STSSCSTDTT  480
ITDTALRGED KDKDDLSTCS GV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1133140GRKRSRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523694.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523694.10.0PREDICTED: growth-regulating factor 9 isoform X1
STRINGXP_010523694.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM137602024
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45480.15e-76growth-regulating factor 9