PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_010523689.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24285.4 Da PI: 7.8931 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 121.6 | 4.3e-38 | 16 | 116 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkael 94 +C aCk+lrrkC+++C++ap+f +e+ + f +vhk+FGasnv+kll ++p ++r+da+++++yeA+ar++dPvyG++ i++lqqq+ +l++el XP_010523689.1 16 PCGACKFLRRKCVPGCIFAPHFDHEEgATYFSAVHKVFGASNVSKLLGQIPLHKRSDAVTTICYEAHARLSDPVYGCFTQIFALQQQVVNLQTEL 110 7*********************99997899***************************************************************** PP DUF260 95 allkee 100 ++l+++ XP_010523689.1 111 SHLQAH 116 *99976 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 22.8 | 15 | 117 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.4E-37 | 16 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 228 aa Download sequence Send to blast |
MSGGEGSGSG AGGNGPCGAC KFLRRKCVPG CIFAPHFDHE EGATYFSAVH KVFGASNVSK 60 LLGQIPLHKR SDAVTTICYE AHARLSDPVY GCFTQIFALQ QQVVNLQTEL SHLQAHLATL 120 EPPPPPPRPP PAVVPPPLLI SDLPENSGSP QPYDLSSSFD PTALRTPSSS WANMQRRLVD 180 PRQQYGAILS SSSGNELQTL AHELFHRHVS PSPPPPGTGG SPPRSISR |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-37 | 12 | 117 | 7 | 111 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-37 | 12 | 117 | 7 | 111 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | XP_010523689.1 |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523689.1 | 1e-166 | PREDICTED: LOB domain-containing protein 18-like | ||||
Swissprot | O22131 | 1e-78 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
TrEMBL | V4N211 | 2e-82 | V4N211_EUTSA; Uncharacterized protein | ||||
STRING | XP_010523689.1 | 1e-165 | (Tarenaya hassleriana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM108 | 28 | 359 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G45420.1 | 6e-75 | LOB domain-containing protein 18 |
Publications ? help Back to Top | |||
---|---|---|---|
|