PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523611.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 88aa    MW: 10143.7 Da    PI: 9.5654
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523611.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.43.3e-081658444
                     S-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  4 WTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44
                     WT+   + + +a + +  +   +W ++ar +g g+t++++k ++
   XP_010523611.1 16 WTAKQNKMFEKALAVFEEEtpdRWQKVARAVG-GKTAEEVKAHY 58
                     *****************99*************.**********9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121862IPR017877Myb-like domain
SMARTSM007170.00121264IPR001005SANT/Myb domain
SuperFamilySSF466897.75E-121470IPR009057Homeodomain-like
PfamPF002491.3E-51658IPR001005SANT/Myb domain
CDDcd001676.69E-51658No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 88 aa     Download sequence    Send to blast
MASTSLTTSR SSSSIWTAKQ NKMFEKALAV FEEETPDRWQ KVARAVGGKT AEEVKAHYDI  60
LVWDIIHIES GKIPIPDYKP CYHKRFMR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A7e-29679174RADIALIS
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523611.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523611.18e-61PREDICTED: protein RADIALIS-like 6
SwissprotQ1A1735e-33RADL6_ARATH; Protein RADIALIS-like 6
TrEMBLA0A315A6X64e-35A0A315A6X6_PRUYE; Protein RADIALIS-like 4
STRINGXP_010523611.13e-60(Tarenaya hassleriana)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.12e-32RAD-like 6