PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523524.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

bZIP

Protein Properties

Length: 184aa MW: 21286.8 Da PI: 6.1217

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523524.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	45.5	1.6e-14	86	135	5	54
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkk 54 +r+rr+++NRe+ArrsR RK+ ++eL v L +eN+ L+++l+ l++ XP_010523524.1 86 RRQRRMISNRESARRSRMRKQRHLDELWSQVTRLRKENHCLIDKLNCLSE 135 79****************************************99998876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00338	9.5E-15	82	146	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	10.76	84	136	IPR004827	Basic-leucine zipper domain
Gene3D	G3DSA:1.20.5.170	2.6E-12	84	135	No hit	No description
Pfam	PF00170	3.3E-12	86	138	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	3.81E-13	86	136	No hit	No description
CDD	cd14702	3.14E-20	87	138	No hit	No description
PROSITE pattern	PS00036	0	89	104	IPR004827	Basic-leucine zipper domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MIPANITGLF DYLPPENLTN FPATEFNMFQ TSMPSPSSSS STSSSFYHLS NLMMNISSNG 60 QELVPTSLSN NSTSDEDRQQ SIIDERRQRR MISNRESARR SRMRKQRHLD ELWSQVTRLR 120 KENHCLIDKL NCLSESHDCV LKENARLKEE TSDLRQLISE MRANSDNMCI GFLREFDDFV 180 PSIN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	77	89	RQQSIIDERRQRR
2	98	105	RRSRMRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269\|PubMed:26973252}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523524.1

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523524.1	1e-133	PREDICTED: basic leucine zipper 43-like
Swissprot	Q9FMC2	3e-34	BZP43_ARATH; Basic leucine zipper 43
TrEMBL	A0A178WP44	2e-60	A0A178WP44_ARATH; BZIP58
TrEMBL	Q9LMY8	2e-60	Q9LMY8_ARATH; Basic leucine-zipper 58
STRING	XP_010523524.1	1e-132	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2892	24	69

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G13600.1	9e-61	basic leucine-zipper 58

Publications ? help Back to Top
Nowak K,Gaj MD Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis. J. Plant Physiol., 2016. 193: p. 119-26 [PMID:26973252] Ezer D, et al. The G-Box Transcriptional Regulatory Code in Arabidopsis. Plant Physiol., 2017. 175(2): p. 628-640 [PMID:28864470]