PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010523487.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ARF
Protein Properties Length: 870aa    MW: 96866.1 Da    PI: 7.567
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010523487.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B371.97.8e-23161262199
                     EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
              B3   1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                     f+k+lt sd++++g +++ +++a+e+      + + + +++l+ +d++ ++W++++i+r++++r++l++GW+ Fv++++L +gD ++F   + ++
  XP_010523487.1 161 FCKTLTASDTSTHGGFSVLRRHADEClppldmSRQ-PPTQELVAKDLHRNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFL--RGEN 252
                     99*****************************7333.34459************************************************..4499 PP

                     E..EEEEE-S CS
              B3  90 felvvkvfrk 99 
                     +el+v+v+r+
  XP_010523487.1 253 GELRVGVRRA 262
                     99*****996 PP
2Auxin_resp111.77e-37287369183
      Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                     a+ha  tk++F+v+Y+Pr+s+seF+v+++++++++k+++++GmRfkm+fe+e+s+e+r++Gtvvg +d+dp r+pnSkWrsLk
  XP_010523487.1 287 AWHAYLTKTMFTVYYKPRKSPSEFIVPFDQYMESVKNNYTIGMRFKMRFEGEESPEQRFTGTVVGFEDADPKRFPNSKWRSLK 369
                     799******************************************************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.3E-41157276IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.27E-40157290IPR015300DNA-binding pseudobarrel domain
CDDcd100174.67E-21159261No hitNo description
PROSITE profilePS5086311.251161263IPR003340B3 DNA binding domain
SMARTSM010192.1E-22161263IPR003340B3 DNA binding domain
PfamPF023621.1E-20161262IPR003340B3 DNA binding domain
PfamPF065075.3E-34287369IPR010525Auxin response factor
PfamPF023091.6E-11710809IPR033389AUX/IAA domain
SuperFamilySSF542777.85E-12721801No hitNo description
PROSITE profilePS5174521.381723808IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 870 aa     Download sequence    Send to blast
MATSEVSMKG NPMHGNGDGL SSGYSDPKEA RNATAGEGQK NHSTRSAVVD PEAALYRELW  60
HACAGPLVTV PRKDDRVFYF PQGHIEQVEA STSPGTEQQM PVYELPSKIL CRVINVDLKA  120
EPDTDEVFAQ ITLIPEANQD EAAVETLPPP PPPPRFQVHS FCKTLTASDT STHGGFSVLR  180
RHADECLPPL DMSRQPPTQE LVAKDLHRNE WRFRHIFRGQ PRRHLLQSGW SVFVSSKRLV  240
AGDAFIFLRG ENGELRVGVR RAMRQQGNVP SSVISSHSMH LGVLATAWHA YLTKTMFTVY  300
YKPRKSPSEF IVPFDQYMES VKNNYTIGMR FKMRFEGEES PEQRFTGTVV GFEDADPKRF  360
PNSKWRSLKV RWDETSTIPR PDRVSPWKIE PALAPPALSP VPMPRPKRPR PTIAPSSPDS  420
SVLTREGSSK ATMDPLPASG LSRVLQGQDY SSLRGKLTES VECNAPENSA VWPPSVDDDR  480
VVVSVSRRYG SENWMSSGRH EPTYTDLLSG FGSNVDTSHN HRLPFTDHSV RPSGPTKKPL  540
GGQDGKFDYV GNQWPLIHSG LSLKLPESSK VPFVGDASFH GHVNVKYGRS KEYPVLHGPT  600
MVENACGNWP MPPHAVNYFE DMAQIREHVA KQPAMRQEKE TGKSRDGNCR LFGIPLVSHS  660
IETEPTEQVS QTQILSPKVL DQSDKSKVLK STKDPRTEQV GRQPQTGQIH QPETAHGKSN  720
STRSCTKVHK QGIALGRSVD LSKFHDYSEL VAELDRLFEF NGELMAALKK EWLIVYTDDE  780
GDMMLVGDDP WQEFCCMVRK IFIYTKEEVR KMNPGALNAR SEEDAAVAEG SDAKSASNNV  840
KKGQHSCQGV EGVKKEQSAI ETTVSTPFSP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-1725439118354Auxin response factor 1
4ldw_A1e-1725439118354Auxin response factor 1
4ldw_B1e-1725439118354Auxin response factor 1
4ldx_A1e-1725439118354Auxin response factor 1
4ldx_B1e-1725439118354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1406410KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. Promotes flowering, stamen development, floral organ abscission and fruit dehiscence. Functions independently of ethylene and cytokinin response pathways. May act as a repressor of cell division and organ growth. {ECO:0000269|PubMed:12036261, ECO:0000269|PubMed:15960614, ECO:0000269|PubMed:16176952, ECO:0000269|PubMed:16339187}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010523487.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010523487.10.0PREDICTED: auxin response factor 2 isoform X1
SwissprotQ94JM30.0ARFB_ARATH; Auxin response factor 2
TrEMBLA0A178UUC30.0A0A178UUC3_ARATH; Auxin response factor
STRINGXP_010523487.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM53482647
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G62000.30.0auxin response factor 2
Publications ? help Back to Top
  1. Chao WS,Doğramaci M,Foley ME,Horvath DP,Anderson JV
    Selection and validation of endogenous reference genes for qRT-PCR analysis in leafy spurge (Euphorbia esula).
    PLoS ONE, 2012. 7(8): p. e42839
    [PMID:22916167]
  2. Ozerova LV,Krasnikova MS,Troitsky AV,Solovyev AG,Morozov SY
    TAS3 Genes for small ta-siARF RNAs in plants belonging to subtribe Senecioninae: occurrence of prematurely terminated RNA precursors.
    Mol. Gen. Mikrobiol. Virusol., 2013.
    [PMID:24003511]
  3. Li C, et al.
    Ectopic expression of a maize hybrid down-regulated gene ZmARF25 decreases organ size by affecting cellular proliferation in Arabidopsis.
    PLoS ONE, 2014. 9(4): p. e94830
    [PMID:24756087]
  4. Lyons R, et al.
    Fusarium oxysporum triggers tissue-specific transcriptional reprogramming in Arabidopsis thaliana.
    PLoS ONE, 2015. 10(4): p. e0121902
    [PMID:25849296]
  5. Roodbarkelari F,Du F,Truernit E,Laux T
    ZLL/AGO10 maintains shoot meristem stem cells during Arabidopsis embryogenesis by down-regulating ARF2-mediated auxin response.
    BMC Biol., 2015. 13: p. 74
    [PMID:26358077]
  6. Meng LS,Wang ZB,Yao SQ,Liu A
    The ARF2-ANT-COR15A gene cascade regulates ABA-signaling-mediated resistance of large seeds to drought in Arabidopsis.
    J. Cell. Sci., 2015. 128(21): p. 3922-32
    [PMID:26395398]
  7. Zhao S,Zhang ML,Ma TL,Wang Y
    Phosphorylation of ARF2 Relieves Its Repression of Transcription of the K+ Transporter Gene HAK5 in Response to Low Potassium Stress.
    Plant Cell, 2016. 28(12): p. 3005-3019
    [PMID:27895227]
  8. Promchuea S,Zhu Y,Chen Z,Zhang J,Gong Z
    ARF2 coordinates with PLETHORAs and PINs to orchestrate ABA-mediated root meristem activity in Arabidopsis .
    J Integr Plant Biol, 2017. 59(1): p. 30-43
    [PMID:28074634]
  9. Wójcikowska B,Gaj MD
    Expression profiling of AUXIN RESPONSE FACTOR genes during somatic embryogenesis induction in Arabidopsis.
    Plant Cell Rep., 2017. 36(6): p. 843-858
    [PMID:28255787]
  10. Sanz-Fernández M, et al.
    Screening Arabidopsis mutants in genes useful for phytoremediation.
    J. Hazard. Mater., 2017. 335: p. 143-151
    [PMID:28441590]
  11. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]
  12. Guan C, et al.
    Spatial Auxin Signaling Controls Leaf Flattening in Arabidopsis.
    Curr. Biol., 2017. 27(19): p. 2940-2950.e4
    [PMID:28943086]
  13. Liu Z, et al.
    ARF2-ARF4 and ARF5 are Essential for Female and Male Gametophyte Development in Arabidopsis.
    Plant Cell Physiol., 2018. 59(1): p. 179-189
    [PMID:29145642]
  14. Sarkar Das S, et al.
    Expression dynamics of miRNAs and their targets in seed germination conditions reveals miRNA-ta-siRNA crosstalk as regulator of seed germination.
    Sci Rep, 2018. 8(1): p. 1233
    [PMID:29352229]