PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523429.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 424aa MW: 48771.7 Da PI: 7.0716

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523429.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	161.7	2.7e-50	63	188	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskk 96 +pGfrFhPt+eel+ +yL++kvegk++++ e i+ +d+y+++Pw+Lp+ ++ +ekewyf+++rd+ky++g+r+nr+t+sgyWkatg d+ + s++ XP_010523429.1 63 MPGFRFHPTEEELIEFYLRRKVEGKRFNV-ELITFLDLYRYDPWELPALAAIGEKEWYFYVPRDRKYRNGDRPNRVTTSGYWKATGADRMIRSET 156 79*************************.89***********8778899************************************* PP NAM 97 gelvglkktLvfykgrapkgektdWvmheyrl 128 ++ +glkktLvfy+g+apkg +t+W+m+eyrl XP_010523429.1 157 SRPIGLKKTLVFYSGKAPKGIRTSWIMNEYRL 188 ****************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.53E-56	62	209	IPR003441	NAC domain
PROSITE profile	PS51005	56.11	62	209	IPR003441	NAC domain
Pfam	PF02365	5.5E-25	64	188	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MAVVSSTTGI ITMSSNVSNG DFHHDRSSNS DKGVEDDDRR GHEGHDDNND DDDDDDHGHD 60 MVMPGFRFHP TEEELIEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF 120 YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSETSRPI GLKKTLVFYS GKAPKGIRTS 180 WIMNEYRLPH HETEKHQKAE ISLCRVYKRP GVEDHPSLPR SLPTRHHRHH HNASSSSSPP 240 SSRLALRQQN PSSSATFPNS SNSSNNTNTR RTKTDNSNSD VTMALVSHQP QQQEQQRHQN 300 IYRPMPYVTS NPVISTMAAE DESVFVNNSV DELQRLVNYQ ISVSDSSNIN QQYYQIAQQF 360 HHHHQQPQQQ QQQNALHLMA AATTLTPQTQ TMNVIPGTMP NNAFPDRLWE VWNHIDCSNI 420 GPFK

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MAVVSSTTGI ITMSSNVSNG DFHHDRSSNS DKGVEDDDRR GHEGHDDNND DDDDDDHGHD  60
MVMPGFRFHP TEEELIEFYL RRKVEGKRFN VELITFLDLY RYDPWELPAL AAIGEKEWYF  120
YVPRDRKYRN GDRPNRVTTS GYWKATGADR MIRSETSRPI GLKKTLVFYS GKAPKGIRTS  180
WIMNEYRLPH HETEKHQKAE ISLCRVYKRP GVEDHPSLPR SLPTRHHRHH HNASSSSSPP  240
SSRLALRQQN PSSSATFPNS SNSSNNTNTR RTKTDNSNSD VTMALVSHQP QQQEQQRHQN  300
IYRPMPYVTS NPVISTMAAE DESVFVNNSV DELQRLVNYQ ISVSDSSNIN QQYYQIAQQF  360
HHHHQQPQQQ QQQNALHLMA AATTLTPQTQ TMNVIPGTMP NNAFPDRLWE VWNHIDCSNI  420
GPFK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	1e-55	64	209	19	165	NO APICAL MERISTEM PROTEIN
1ut4_B	1e-55	64	209	19	165	NO APICAL MERISTEM PROTEIN
1ut7_A	1e-55	64	209	19	165	NO APICAL MERISTEM PROTEIN
1ut7_B	1e-55	64	209	19	165	NO APICAL MERISTEM PROTEIN
3swm_A	1e-55	64	209	22	168	NAC domain-containing protein 19
3swm_B	1e-55	64	209	22	168	NAC domain-containing protein 19
3swm_C	1e-55	64	209	22	168	NAC domain-containing protein 19
3swm_D	1e-55	64	209	22	168	NAC domain-containing protein 19
3swp_A	1e-55	64	209	22	168	NAC domain-containing protein 19
3swp_B	1e-55	64	209	22	168	NAC domain-containing protein 19
3swp_C	1e-55	64	209	22	168	NAC domain-containing protein 19
3swp_D	1e-55	64	209	22	168	NAC domain-containing protein 19
4dul_A	1e-55	64	209	19	165	NAC domain-containing protein 19
4dul_B	1e-55	64	209	19	165	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that acts as a floral repressor. Controls flowering time by negatively regulating CONSTANS (CO) expression in a GIGANTEA (GI)-independent manner. Regulates the plant cold response by positive regulation of the cold response genes COR15A and KIN1. May coordinate cold response and flowering time. {ECO:0000269\|PubMed:17653269}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523429.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Circadian regulation with a peak of expression at dawn under continuous light conditions (PubMed:17653269). Circadian regulation with a peak of expression around dusk and lowest expression around dawn under continuous light conditions (at protein level) (PubMed:17653269). {ECO:0000269\|PubMed:17653269}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523429.1	0.0	PREDICTED: NAC domain-containing protein 35
Swissprot	Q9ZVP8	1e-164	NAC35_ARATH; NAC domain-containing protein 35
TrEMBL	A0A0D3E7K3	1e-165	A0A0D3E7K3_BRAOL; Uncharacterized protein
STRING	XP_010523429.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM5436	27	50

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02450.2	1e-117	NAC domain containing protein 35

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Okajima K Molecular mechanism of phototropin light signaling. J. Plant Res., 2016. 129(2): p. 149-57 [PMID:26815763] Nakasone Y,Ohshima M,Okajima K,Tokutomi S,Terazima M Photoreaction Dynamics of LOV1 and LOV2 of Phototropin from Chlamydomonas reinhardtii. J Phys Chem B, 2018. 122(6): p. 1801-1815 [PMID:29355019]