PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_010523174.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
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Family | C2H2 | ||||||||
Protein Properties | Length: 205aa MW: 23397.5 Da PI: 11.1631 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.3 | 0.00052 | 127 | 149 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C C+++F ++ L rH H XP_010523174.1 127 YRCDACPRVFDSPQGLGRHRVFH 149 9******************8776 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50157 | 10.034 | 127 | 154 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 129 | 149 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MLQIRRSMPS PFTVSSPSSI RPKHLCPRCS RQAAAMRPRP RGRPPAKTRT NPKRSASMSS 60 SRMSGPDIRA PLSRESKSLA LCKIAEIKHV DEGEDDYYVY DDEDDATFSL TSRRTTGSKR 120 RRRRNGYRCD ACPRVFDSPQ GLGRHRVFHR NNPTRGVLLC SHCHRVFESS DRENVPARAD 180 HARFDLNLRP SLENNFPLDL NRLPA |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 118 | 123 | KRRRRR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | XP_010523174.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010523174.1 | 1e-147 | PREDICTED: uncharacterized protein LOC104801559 | ||||
STRING | XP_010523174.1 | 1e-147 | (Tarenaya hassleriana) |