PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_010523106.1

Organism

Tarenaya hassleriana

Taxonomic ID

28532

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya

Family

NAC

Protein Properties

Length: 361aa MW: 40861.5 Da PI: 7.5307

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_010523106.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.8	3.4e-56	16	142	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 lppGfrFhPtdeel+++yL++kv ++ +++ ++i evd++k+ePw+Lp k+k +ekewyfF+ rd+ky+tg r+nrat++gyWkatgkdke+++ XP_010523106.1 16 LPPGFRFHPTDEELITHYLHEKVLDSGFSA-KAIGEVDLNKSEPWELPWKAKMGEKEWYFFCVRDRKYPTGLRTNRATEAGYWKATGKDKEIHR- 108 79*************************9.89***********888999***********************************9. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg+kktLvfy+grapkg+kt+Wvmhe+rle XP_010523106.1 109 RKSLVGMKKTLVFYRGRAPKGQKTNWVMHEFRLE 142 999**************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.57E-61	12	151	IPR003441	NAC domain
PROSITE profile	PS51005	56.578	16	194	IPR003441	NAC domain
Pfam	PF02365	3.9E-29	17	141	IPR003441	NAC domain
SuperFamily	SSF101941	1.57E-61	182	194	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence Send to blast
MEPICGFDKE DEQMDLPPGF RFHPTDEELI THYLHEKVLD SGFSAKAIGE VDLNKSEPWE 60 LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIHRRK SLVGMKKTLV 120 FYRGRAPKGQ KTNWVMHEFR LEGKLSAHNL PKTAKVKANL CSVLLVCFRL SISVLVWSAL 180 VWQNEWVVCR VFQKSAGGNK IPISGLIRIG SFKTGLDPSS LPPLTDFSSL YNDKTKPEPV 240 VYVPCFSNPT ENQGNTVLNS VQTNVLPRIP LHQSHSVPVS EDLQSPNPDL IQEQTVLRAM 300 MIENSGRQSF KTSSVSQETG VSTEINTDVS SDFEFGLRQF DPREEPSSSA GPADIESFWI 360 Y

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence Send to blast

MEPICGFDKE DEQMDLPPGF RFHPTDEELI THYLHEKVLD SGFSAKAIGE VDLNKSEPWE  60
LPWKAKMGEK EWYFFCVRDR KYPTGLRTNR ATEAGYWKAT GKDKEIHRRK SLVGMKKTLV  120
FYRGRAPKGQ KTNWVMHEFR LEGKLSAHNL PKTAKVKANL CSVLLVCFRL SISVLVWSAL  180
VWQNEWVVCR VFQKSAGGNK IPISGLIRIG SFKTGLDPSS LPPLTDFSSL YNDKTKPEPV  240
VYVPCFSNPT ENQGNTVLNS VQTNVLPRIP LHQSHSVPVS EDLQSPNPDL IQEQTVLRAM  300
MIENSGRQSF KTSSVSQETG VSTEINTDVS SDFEFGLRQF DPREEPSSSA GPADIESFWI  360
Y

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3swm_A	7e-51	13	200	17	174	NAC domain-containing protein 19
3swm_B	7e-51	13	200	17	174	NAC domain-containing protein 19
3swm_C	7e-51	13	200	17	174	NAC domain-containing protein 19
3swm_D	7e-51	13	200	17	174	NAC domain-containing protein 19
3swp_A	7e-51	13	200	17	174	NAC domain-containing protein 19
3swp_B	7e-51	13	200	17	174	NAC domain-containing protein 19
3swp_C	7e-51	13	200	17	174	NAC domain-containing protein 19
3swp_D	7e-51	13	200	17	174	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	XP_010523106.1

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by the microRNA miR164. {ECO:0000269\|PubMed:15294871, ECO:0000269\|PubMed:17098808}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010523106.1	0.0	PREDICTED: NAC domain-containing protein 100-like isoform X1
Swissprot	Q9FLJ2	0.0	NC100_ARATH; NAC domain-containing protein 100
TrEMBL	D7MV19	0.0	D7MV19_ARALL; ANAC100/ATNAC5
STRING	XP_010523106.1	0.0	(Tarenaya hassleriana)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM400	28	174

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G61430.1	0.0	NAC domain containing protein 100

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]