PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522998.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family ERF
Protein Properties Length: 154aa    MW: 16668.8 Da    PI: 10.9276
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522998.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.5e-162776255
             AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                     y+G+r +k +g+WvAeIr+p   +kr r +lg++ +a  Aa+a++ a  +l+g
  XP_010522998.1 27 PYRGIRMRK-WGKWVAEIREP---NKRSRLWLGSYSSAVAAARAYDTAVFYLRG 76
                    59*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.7E-302785IPR001471AP2/ERF domain
SMARTSM003805.3E-352790IPR001471AP2/ERF domain
PROSITE profilePS5103222.2072784IPR001471AP2/ERF domain
CDDcd000184.06E-232886No hitNo description
PfamPF008474.5E-102876IPR001471AP2/ERF domain
PRINTSPR003676.9E-122839IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-202885IPR016177DNA-binding domain
PRINTSPR003676.9E-126686IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0009414Biological Processresponse to water deprivation
GO:0042538Biological Processhyperosmotic salinity response
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MGAENFPASS AAGKGKRVRR RSQKERPYRG IRMRKWGKWV AEIREPNKRS RLWLGSYSSA  60
VAAARAYDTA VFYLRGPSAR LNFPDLIFAD DGGGGGEVGD MSAAVIRKRA AEVGARVDAA  120
VRSGQAAESA APWRTAEKPD LNKLPEAGSY EVGV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-152484263ATERF1
3gcc_A7e-152484263ATERF1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00430DAPTransfer from AT4G06746Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522998.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522998.11e-105PREDICTED: ethylene-responsive transcription factor RAP2-9
SwissprotQ8LC302e-51RAP21_ARATH; Ethylene-responsive transcription factor RAP2-1
SwissprotQ8W3M32e-51RAP29_ARATH; Ethylene-responsive transcription factor RAP2-9
TrEMBLA0A061FAM43e-56A0A061FAM4_THECC; AP2/ERF domain-containing transcription factor
STRINGXP_010522998.11e-105(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM10281650
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46768.18e-37related to AP2 1
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]