PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010522907.1
Organism
Tarenaya hassleriana
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family Dof
Protein Properties Length: 313aa    MW: 34072.7 Da    PI: 8.6538
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010522907.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof121.33.3e-3861119260
          zf-Dof   2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60 
                     +++ l+cprC+stntkfCyynnyslsqPry+Ck+CrryWt+GG+lrnvPvGgg+rk+kk
  XP_010522907.1  61 PQEPLNCPRCNSTNTKFCYYNNYSLSQPRYLCKTCRRYWTEGGSLRNVPVGGGSRKSKK 119
                     68899****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-2760119IPR003851Zinc finger, Dof-type
PfamPF027011.7E-3363119IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.65865119IPR003851Zinc finger, Dof-type
PROSITE patternPS01361067103IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDHYHHHHHD QYHPQVALNN NNISNNNNPY HSNITAAART AASSARTAAA TMLDQKKMTR  60
PQEPLNCPRC NSTNTKFCYY NNYSLSQPRY LCKTCRRYWT EGGSLRNVPV GGGSRKSKKL  120
PQTIMTSSPS SSCSPSTAKI LPDLNPPFVF PSSSSSAHLQ NPSKNIDHHD LNLSFSGAMQ  180
STRGQGHFGH FTGPLGTSPS GGQICLFGPG GLGPSTGMIQ FHQDYDNKGS LGFSLDGQEE  240
IGNSVVNGGG RVMFPYEDIK QLIPTATTTT SHDDRVQDLY GHDLQKHEAT NKRQGGSSNE  300
LWSGIILGGG PTW
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapXP_010522907.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010522907.10.0PREDICTED: dof zinc finger protein DOF4.1
SwissprotQ9M1612e-81DOF41_ARATH; Dof zinc finger protein DOF4.1
TrEMBLA0A1J3CCP52e-85A0A1J3CCP5_NOCCA; Dof zinc finger protein DOF4.1
STRINGXP_010522907.10.0(Tarenaya hassleriana)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM146951720
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00940.12e-82Dof family protein